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Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations 期刊论文
CURRENT BIOINFORMATICS, 2019, 卷号: 14, 期号: 1, 页码: 4-10
作者:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
收藏  |  浏览/下载：182/0  |  提交时间：2019/04/02
Biological network  network alignment  gene ontology  alignment graph  optimization  
NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis 期刊论文
BMC SYSTEMS BIOLOGY, 2017, 卷号: 11, 页码: 14
作者:  Sun, Duanchen;  Liu, Yinliang;  Zhang, Xiang-Sun;  Wu, Ling-Yun
收藏  |  浏览/下载：134/0  |  提交时间：2018/07/30
Gene ontology  Enrichment analysis  Network-based probabilistic generative model  Integer programming  Complex diseases  
IIIDB: a database for isoform-isoform interactions and isoform network modules 期刊论文
BMC Genomics, 2015, 卷号: 16, 期号: Suppl 2
作者:  Tseng,Yu-Ting;  Li,Wenyuan;  Chen,Ching-Hsien;  Zhang,Shihua;  Chen,Jeremy JW;  Zhou,Xianghong Jasmine;  Liu,Chun-Chi
收藏  |  浏览/下载：142/0  |  提交时间：2018/07/30
Determining modular organization of protein interaction networks by maximizing modularity density 期刊论文
BMC SYSTEMS BIOLOGY, 2010, 卷号: 4, 页码: 12
作者:  Zhang, Shihua;  Ning, Xue-Mei;  Ding, Chris;  Zhang, Xiang-Sun
收藏  |  浏览/下载：142/0  |  提交时间：2018/07/30
A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks 期刊论文
INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS, 2009, 卷号: 3, 期号: 1, 页码: 68-84
作者:  Zhang, Shihua;  Liu, Hong-Wei;  Ning, Xue-Mei;  Zhang, Xiang-Sun
收藏  |  浏览/下载：207/0  |  提交时间：2018/07/30
PPI  protein-protein interaction network  network clustering  LGT  line graph transformation  protein complexes  functional modules  data mining  bioinformatics  
The knowledge-integrated network biomarkers discovery for Major Adverse Cardiac Events 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2008, 卷号: 7, 期号: 9, 页码: 4013-4021
作者:  Jin, Guangxu;  Zhou, Xiaobo;  Wang, Honghui;  Zhao, Hong;  Cui, Kemi;  Zhang, Xiang-Sun;  Chen, Luonan;  Hazen, Stanley L.;  Li, King;  Wong, Stephen T. C.
收藏  |  浏览/下载：92/0  |  提交时间：2018/07/30
proteomics  mass spectrometry  MACE  network biomarker  cross validation  systems biology  
Discovering functions and revealing mechanisms at molecular level from biological networks 期刊论文
PROTEOMICS, 2007, 卷号: 7, 期号: 16, 页码: 2856-2869
作者:  Zhang, Shihua;  Jin, Guangxu;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：127/0  |  提交时间：2018/07/30
biological network  network analysis  network comparison  network integration  protein interaction network  
Identification of functional modules in a PPI network by clique percolation clustering 期刊论文
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2006, 卷号: 30, 期号: 6, 页码: 445-451
作者:  Zhang, Shihua;  Ning, Xuemei;  Zhang, Xiang-Sun
收藏  |  浏览/下载：128/0  |  提交时间：2018/07/30
protein-protein interaction (PPI) network  network clustering  protein complexes  functional modules  clique percolation clustering  
Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods 期刊论文
COMPUTATIONAL INTELLIGENCE AND BIOINFORMATICS, PT 3, PROCEEDINGS, 2006, 卷号: 4115, 页码: 514-524
作者:  Zhang, Shi-Hua;  Ning, Xue-Mei;  Liu, Hong-Wei;  Zhang, Xiang-Sun
收藏  |  浏览/下载：94/0  |  提交时间：2018/07/30