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Multiple-Tissue and Multilevel Analysis on Differentially Expressed Genes and Differentially Correlated Gene Pairs for HFpEF 期刊论文
FRONTIERS IN GENETICS, 2021, 卷号: 12, 页码: 14
Authors:  Zhou, Guofeng;  Sun, Shaoyan;  Yuan, Qiuyue;  Zhang, Run;  Jiang, Ping;  Li, Guangyu;  Wang, Yong;  Li, Xiao
Favorite  |  View/Download:98/0  |  Submit date:2021/10/26
heart failure with preserved ejection fraction  differentially expressed genes  differentially correlated gene pairs  differential network  molecular docking  
Integrative analysis for identifying joint modular patterns of gene-expression and drug-response data 期刊论文
BIOINFORMATICS, 2016, 卷号: 32, 期号: 11, 页码: 1724-1732
Authors:  Chen, Jinyu;  Zhang, Shihua
Favorite  |  View/Download:110/0  |  Submit date:2018/07/30
IIIDB: a database for isoform-isoform interactions and isoform network modules 期刊论文
BMC Genomics, 2015, 卷号: 16, 期号: Suppl 2
Authors:  Tseng,Yu-Ting;  Li,Wenyuan;  Chen,Ching-Hsien;  Zhang,Shihua;  Chen,Jeremy JW;  Zhou,Xianghong Jasmine;  Liu,Chun-Chi
Favorite  |  View/Download:104/0  |  Submit date:2018/07/30
Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data 期刊论文
BMC Systems Biology, 2013, 卷号: 7, 期号: Suppl 2
Authors:  Zhang,Junhua;  Zhang,Shihua;  Wang,Yong;  Zhang,Xiang-Sun
Favorite  |  View/Download:111/0  |  Submit date:2018/07/30
gomafunctionalenrichmentanalysistoolbasedongomodules 期刊论文
chinesejournalofcancer, 2013, 卷号: 32, 期号: 4, 页码: 195
Authors:  Huang Qiang;  Wu Lingyun;  Wang Yong;  Zhang Xiangsun
Favorite  |  View/Download:134/0  |  Submit date:2020/01/10
A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules 期刊论文
BIOINFORMATICS, 2011, 卷号: 27, 期号: 13, 页码: I401-I409
Authors:  Zhang, Shihua;  Li, Qingjiao;  Liu, Juan;  Zhou, Xianghong Jasmine
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Determining modular organization of protein interaction networks by maximizing modularity density 期刊论文
BMC SYSTEMS BIOLOGY, 2010, 卷号: 4, 页码: 12
Authors:  Zhang, Shihua;  Ning, Xue-Mei;  Ding, Chris;  Zhang, Xiang-Sun
Favorite  |  View/Download:110/0  |  Submit date:2018/07/30
A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks 期刊论文
Authors:  Zhang, Shihua;  Liu, Hong-Wei;  Ning, Xue-Mei;  Zhang, Xiang-Sun
Favorite  |  View/Download:132/0  |  Submit date:2018/07/30
PPI  protein-protein interaction network  network clustering  LGT  line graph transformation  protein complexes  functional modules  data mining  bioinformatics  
Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures 期刊论文
NEUROCOMPUTING, 2008, 卷号: 72, 期号: 1-3, 页码: 134-141
Authors:  Wang, Rui-Sheng;  Zhang, Shihua;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
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Complex networks  Biological networks  Community structure  Nonnegative matrix factorization  Similarity measure  
Discovering functions and revealing mechanisms at molecular level from biological networks 期刊论文
PROTEOMICS, 2007, 卷号: 7, 期号: 16, 页码: 2856-2869
Authors:  Zhang, Shihua;  Jin, Guangxu;  Zhang, Xiang-Sun;  Chen, Luonan
Favorite  |  View/Download:100/0  |  Submit date:2018/07/30
biological network  network analysis  network comparison  network integration  protein interaction network