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中国科学院数学与系统科学研究院机构知识库
KMS Of Academy of mathematics and systems sciences, CAS
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Interaction-based transcriptome analysis via differential network inference
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 11
作者:
Leng, Jiacheng
;
Wu, Ling-Yun
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浏览/下载:46/0
  |  
提交时间:2023/02/07
differential network inference
differential expression analysis
interaction-based transcriptome analysis
Multilayer Financial Complex Networks and Their Applications
期刊论文
IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS I-REGULAR PAPERS, 2022, 页码: 14
作者:
Li, Xuerong
;
Xu, Xiaoyue
;
Liu, Jiaqi
;
Dong, Jichang
;
Lu, Jinhu
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  |  
浏览/下载:92/0
  |  
提交时间:2023/02/07
Couplings
Complex networks
Biological system modeling
Banking
Entropy
Analytical models
Urban areas
Financial networks
maximum entropy approach
multi-layer networks
risk contagion
spillover effects
Prediction of the transcription factor binding sites with meta-learning
期刊论文
METHODS, 2022, 卷号: 203, 页码: 207-213
作者:
Jing, Fang
;
Zhang, Shao-Wu
;
Zhang, Shihua
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  |  
浏览/下载:162/0
  |  
提交时间:2023/02/07
Convolution neural network
Transcription factor binding sites
Meta learning
Noisy labels data
Identification of Common Driver Gene Modules and Associations between Cancers through Integrated Network Analysis
期刊论文
GLOBAL CHALLENGES, 2021, 页码: 13
作者:
Gao, Bo
;
Zhao, Yue
;
Gao, Yonghang
;
Li, Guojun
;
Wu, Ling-Yun
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  |  
浏览/下载:178/0
  |  
提交时间:2021/10/26
driver gene module
gene mutation
mutual exclusivity
network analysis
signaling pathway
Joint reconstruction of cis-regulatory interaction networks across multiple tissues using single-cell chromatin accessibility data
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 3, 页码: 15
作者:
Dong, Kangning
;
Zhang, Shihua
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  |  
浏览/下载:111/0
  |  
提交时间:2022/04/02
cis-regulatory interaction networks
single-cell ATAC-seq
Gaussian graphical LASSO
A Novel Sparse Graph-Regularized Singular Value Decomposition Model and Its Application to Genomic Data Analysis
期刊论文
IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, 2021, 页码: 15
作者:
Min, Wenwen
;
Wan, Xiang
;
Chang, Tsung-Hui
;
Zhang, Shihua
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  |  
浏览/下载:135/0
  |  
提交时间:2022/04/02
Gene expression
Biology
Biological system modeling
Principal component analysis
Mathematical model
Data models
Big Data
Absolute-valued graph regularization
graph regularization
sparse learning
structured sparse singular value decomposition (SVD)
Circular Complex-Valued GMDH-Type Neural Network for Real-Valued Classification Problems
期刊论文
IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, 2020, 卷号: 31, 期号: 12, 页码: 5285-5299
作者:
Xiao, Jin
;
Jia, Yanlin
;
Jiang, Xiaoyi
;
Wang, Shouyang
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  |  
浏览/下载:132/0
  |  
提交时间:2021/04/26
Biological system modeling
Data models
Biological neural networks
Predictive models
Neurons
Mathematical model
Complex-valued external criterion
complex-valued group method of data handling (GMDH)-type neural network
parameter estimation
real-valued classification
Prediction of enhancer-promoter interactions using the cross-cell type information and domain adversarial neural network
期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 16
作者:
Jing, Fang
;
Zhang, Shao-Wu
;
Zhang, Shihua
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  |  
浏览/下载:139/0
  |  
提交时间:2021/01/14
Enhancer–
promoter interactions
Cell line
Convolutional neural network
Transfer learning
Gradient reversal layer
Prediction of enhancer–promoter interactions using the cross-cell type information and domain adversarial neural network
期刊论文
BMC Bioinformatics, 2020, 卷号: 21, 期号: 1
作者:
Jing,Fang
;
Zhang,Shao-Wu
;
Zhang,Shihua
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  |  
浏览/下载:140/0
  |  
提交时间:2021/01/14
Enhancer–promoter interactions
Cell line
Convolutional neural network
Transfer learning
Gradient reversal layer
A Branch Point on Differentiation Trajectory is the Bifurcating Event Revealed by Dynamical Network Biomarker Analysis of Single-Cell Data
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 366-375
作者:
Chen, Ziwei
;
Bai, Xiangqi
;
Ma, Liang
;
Wang, Xiawei
;
Liu, Xiuqin
;
Liu, Yuting
;
Chen, Luonan
;
Wan, Lin
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  |  
浏览/下载:172/0
  |  
提交时间:2020/05/24
Trajectory
Heuristic algorithms
Mice
Correlation
Reactive power
Pseudo temporal trajectory
branch point
DNB theory
reconstruction
single-cell data
bifurcation
dynamical system