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Identification of Common Driver Gene Modules and Associations between Cancers through Integrated Network Analysis 期刊论文
GLOBAL CHALLENGES, 2021, 页码: 13
Authors:  Gao, Bo;  Zhao, Yue;  Gao, Yonghang;  Li, Guojun;  Wu, Ling-Yun
Favorite  |  View/Download:0/0  |  Submit date:2021/10/26
driver gene module  gene mutation  mutual exclusivity  network analysis  signaling pathway  
Circular Complex-Valued GMDH-Type Neural Network for Real-Valued Classification Problems 期刊论文
IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, 2020, 卷号: 31, 期号: 12, 页码: 5285-5299
Authors:  Xiao, Jin;  Jia, Yanlin;  Jiang, Xiaoyi;  Wang, Shouyang
Favorite  |  View/Download:7/0  |  Submit date:2021/04/26
Biological system modeling  Data models  Biological neural networks  Predictive models  Neurons  Mathematical model  Complex-valued external criterion  complex-valued group method of data handling (GMDH)-type neural network  parameter estimation  real-valued classification  
Prediction of enhancer–promoter interactions using the cross-cell type information and domain adversarial neural network 期刊论文
BMC Bioinformatics, 2020, 卷号: 21, 期号: 1
Authors:  Jing,Fang;  Zhang,Shao-Wu;  Zhang,Shihua
Favorite  |  View/Download:11/0  |  Submit date:2021/01/14
Enhancer–promoter interactions  Cell line  Convolutional neural network  Transfer learning  Gradient reversal layer  
Prediction of enhancer-promoter interactions using the cross-cell type information and domain adversarial neural network 期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 16
Authors:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
Favorite  |  View/Download:12/0  |  Submit date:2021/01/14
Enhancer–  promoter interactions  Cell line  Convolutional neural network  Transfer learning  Gradient reversal layer  
A Branch Point on Differentiation Trajectory is the Bifurcating Event Revealed by Dynamical Network Biomarker Analysis of Single-Cell Data 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 366-375
Authors:  Chen, Ziwei;  Bai, Xiangqi;  Ma, Liang;  Wang, Xiawei;  Liu, Xiuqin;  Liu, Yuting;  Chen, Luonan;  Wan, Lin
Favorite  |  View/Download:24/0  |  Submit date:2020/05/24
Trajectory  Heuristic algorithms  Mice  Correlation  Reactive power  Pseudo temporal trajectory  branch point  DNB theory  reconstruction  single-cell data  bifurcation  dynamical system  
Hierarchical graphical model reveals HFR1 bridging circadian rhythm and flower development in Arabidopsis thaliana 期刊论文
NPJ SYSTEMS BIOLOGY AND APPLICATIONS, 2019, 卷号: 5, 页码: 11
Authors:  Duren, Zhana;  Wang, Yaling;  Wang, Jiguang;  Zhao, Xing-Ming;  Lv, Le;  Li, Xiaobo;  Liu, Jingdong;  Zhu, Xin-Guang;  Chen, Luonan;  Wang, Yong
Favorite  |  View/Download:39/0  |  Submit date:2020/05/24
Controllability Analysis of a Gene Network for Arabidopsis thaliana Reveals Characteristics of Functional Gene Families 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2019, 卷号: 16, 期号: 3, 页码: 912-924
Authors:  Wang, Pei;  Wang, Daojie;  Lu, Jinhu
Favorite  |  View/Download:31/0  |  Submit date:2020/01/10
Structural controllability  Arabidopsis thaliana  gene network  functional gene  enrichment analysis  
Discovering cooperative biomarkers for heterogeneous complex disease diagnoses 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 89-101
Authors:  Sun, Duanchen;  Ren, Xianwen;  Ari, Eszter;  Korcsmaros, Tamas;  Csermely, Peter;  Wu, Ling-Yun
Favorite  |  View/Download:51/0  |  Submit date:2019/03/05
heterogeneous diseases  cancer biomarker  network-based  cooperative biomarker  gene expression  
Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations 期刊论文
CURRENT BIOINFORMATICS, 2019, 卷号: 14, 期号: 1, 页码: 4-10
Authors:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
Favorite  |  View/Download:49/0  |  Submit date:2019/04/02
Biological network  network alignment  gene ontology  alignment graph  optimization  
A heterogeneous label propagation approach to explore the potential associations between miRNA and disease 期刊论文
Journal of Translational Medicine, 2018, 卷号: 16, 期号: 1
Authors:  Chen,Xing;  Zhang,De-Hong;  You,Zhu-Hong
Favorite  |  View/Download:99/0  |  Submit date:2019/01/07
miRNA  Disease  miRNA-disease association  Multi-network  Label propagation