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A Branch Point on Differentiation Trajectory is the Bifurcating Event Revealed by Dynamical Network Biomarker Analysis of Single-Cell Data 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 366-375
Authors:  Chen, Ziwei;  Bai, Xiangqi;  Ma, Liang;  Wang, Xiawei;  Liu, Xiuqin;  Liu, Yuting;  Chen, Luonan;  Wan, Lin
Favorite  |  View/Download:8/0  |  Submit date:2020/05/24
Trajectory  Heuristic algorithms  Mice  Correlation  Reactive power  Pseudo temporal trajectory  branch point  DNB theory  reconstruction  single-cell data  bifurcation  dynamical system  
Hierarchical graphical model reveals HFR1 bridging circadian rhythm and flower development in Arabidopsis thaliana 期刊论文
NPJ SYSTEMS BIOLOGY AND APPLICATIONS, 2019, 卷号: 5, 页码: 11
Authors:  Duren, Zhana;  Wang, Yaling;  Wang, Jiguang;  Zhao, Xing-Ming;  Lv, Le;  Li, Xiaobo;  Liu, Jingdong;  Zhu, Xin-Guang;  Chen, Luonan;  Wang, Yong
Favorite  |  View/Download:5/0  |  Submit date:2020/05/24
Controllability Analysis of a Gene Network for Arabidopsis thaliana Reveals Characteristics of Functional Gene Families 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2019, 卷号: 16, 期号: 3, 页码: 912-924
Authors:  Wang, Pei;  Wang, Daojie;  Lu, Jinhu
Favorite  |  View/Download:10/0  |  Submit date:2020/01/10
Structural controllability  Arabidopsis thaliana  gene network  functional gene  enrichment analysis  
Discovering cooperative biomarkers for heterogeneous complex disease diagnoses 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 89-101
Authors:  Sun, Duanchen;  Ren, Xianwen;  Ari, Eszter;  Korcsmaros, Tamas;  Csermely, Peter;  Wu, Ling-Yun
Favorite  |  View/Download:22/0  |  Submit date:2019/03/05
heterogeneous diseases  cancer biomarker  network-based  cooperative biomarker  gene expression  
Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations 期刊论文
CURRENT BIOINFORMATICS, 2019, 卷号: 14, 期号: 1, 页码: 4-10
Authors:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
Favorite  |  View/Download:19/0  |  Submit date:2019/04/02
Biological network  network alignment  gene ontology  alignment graph  optimization  
A heterogeneous label propagation approach to explore the potential associations between miRNA and disease 期刊论文
Journal of Translational Medicine, 2018, 卷号: 16, 期号: 1
Authors:  Chen,Xing;  Zhang,De-Hong;  You,Zhu-Hong
Favorite  |  View/Download:27/0  |  Submit date:2019/01/07
miRNA  Disease  miRNA-disease association  Multi-network  Label propagation  
Edge-group sparse PCA for network-guided high dimensional data analysis 期刊论文
BIOINFORMATICS, 2018, 卷号: 34, 期号: 20, 页码: 3479-3487
Authors:  Min, Wenwen;  Liu, Juan;  Zhang, Shihua
Favorite  |  View/Download:20/0  |  Submit date:2019/01/11
Inferring potential small molecule–miRNA association based on triple layer heterogeneous network 期刊论文
Journal of Cheminformatics, 2018, 卷号: 10, 期号: 1
Authors:  Qu,Jia;  Chen,Xing;  Sun,Ya-Zhou;  Li,Jian-Qiang;  Ming,Zhong
Favorite  |  View/Download:16/0  |  Submit date:2018/07/30
microRNA  Small molecule  Association prediction  Triple layer heterogeneous network  
A Novel Biologically Inspired Visual Cognition Model: Automatic Extraction of Semantics, Formation of Integrated Concepts, and Reselection Features for Ambiguity 期刊论文
IEEE TRANSACTIONS ON COGNITIVE AND DEVELOPMENTAL SYSTEMS, 2018, 卷号: 10, 期号: 2, 页码: 420-431
Authors:  Yin, Peijie;  Qiao, Hong;  Wu, Wei;  Qi, Lu;  Li, Yinlin;  Zhong, Shanlin;  Zhang, Bo
Favorite  |  View/Download:20/0  |  Submit date:2018/07/30
Biologically inspired model  object recognition  semantic learning  structural learning  
Matrix Integrative Analysis (MIA) of Multiple Genomic Data for Modular Patterns 期刊论文
FRONTIERS IN GENETICS, 2018, 卷号: 9, 页码: 12
Authors:  Chen, Jinyu;  Zhang, Shihua
Favorite  |  View/Download:20/0  |  Submit date:2018/07/30
bioinformatics  multi-dimensional genomics  matrix integrative analysis  data integration  module discovery  non-negative matrix factorization (NMF)  partial least squares (PLS)