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MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 6, 页码: 14
Authors:  Zou, Meng;  Duren, Zhana;  Yuan, Qiuyue;  Li, Henry;  Hutchins, Andrew Paul;  Wong, Wing Hung;  Wang, Yong
Favorite  |  View/Download:59/0  |  Submit date:2022/04/02
cell type-specific marker  TFs  surface markers  dimension reduction  hierarchical topology  
OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions 期刊论文
NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: W1, 页码: W483-W490
Authors:  Chen, Shengquan;  Liu, Qiao;  Cui, Xuejian;  Feng, Zhanying;  Li, Chunquan;  Wang, Xiaowo;  Zhang, Xuegong;  Wang, Yong;  Jiang, Rui
Favorite  |  View/Download:65/0  |  Submit date:2021/10/26
A ROC-based test for evaluating the group difference with an application to neonatal audiology screening 期刊论文
STATISTICS IN MEDICINE, 2021, 页码: 12
Authors:  Tang, Larry L.;  Meng, Zhen;  Li, Qizhai
Favorite  |  View/Download:65/0  |  Submit date:2021/10/26
ROC curve  sensitivity  specificity  two‐  sample comparison  
Joint reconstruction of cis-regulatory interaction networks across multiple tissues using single-cell chromatin accessibility data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 3, 页码: 15
Authors:  Dong, Kangning;  Zhang, Shihua
Favorite  |  View/Download:50/0  |  Submit date:2022/04/02
cis-regulatory interaction networks  single-cell ATAC-seq  Gaussian graphical LASSO  
3Scover: Identifying Safeguard TF from Cell Type-TF Specificity Network by an Extended Minimum Set Cover Model 期刊论文
ISCIENCE, 2020, 卷号: 23, 期号: 6, 页码: 31
Authors:  Yuan, Qiuyue;  Wang, Yong
Favorite  |  View/Download:95/0  |  Submit date:2020/09/23
Unambiguous Phosphosite Localization through the Combination of Trypsin and LysargiNase Mirror Spectra in a Large-Scale Phosphoproteome Study 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2020, 卷号: 19, 期号: 6, 页码: 2185-2194
Authors:  Xu, Feng;  Yu, Li;  Peng, Xuehui;  Zhang, Junling;  Li, Suzhen;  Liu, Shu;  Yin, Yanan;  An, Zhiwu;  Wang, Fuqiang;  Fu, Yan;  Xu, Ping
Favorite  |  View/Download:116/0  |  Submit date:2020/09/23
trypsin  LysargiNase  combined spectra  ion coverage  phosphosite localization  PTMiner  
scTIM: seeking cell-type-indicative marker from single cell RNA-seq data by consensus optimization 期刊论文
BIOINFORMATICS, 2020, 卷号: 36, 期号: 8, 页码: 2474-2485
Authors:  Feng, Zhanying;  Ren, Xianwen;  Fang, Yuan;  Yin, Yining;  Huang, Chutian;  Zhao, Yimin;  Wang, Yong
Favorite  |  View/Download:102/0  |  Submit date:2020/06/30
ELF: Extract Landmark Features By Optimizing Topology Maintenance, Redundancy, and Specificity 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 411-421
Authors:  Feng, Zhan-Ying;  Wang, Yong
Favorite  |  View/Download:114/0  |  Submit date:2020/05/24
Feature extraction  Topology  Ground penetrating radar  Geophysical measurement techniques  Redundancy  Maintenance engineering  Manganese  Feature selection  topology maintenance  optimization  single cell  
Principles of Inter-Amino-Acid Recognition Revealed by Binding Energies between Homogeneous Oligopeptides 期刊论文
ACS CENTRAL SCIENCE, 2019, 卷号: 5, 期号: 1, 页码: 97-108
Authors:  Du, Huiwen;  Hu, Xiaoyu;  Duan, Hongyang;  Yu, Lanlan;  Qu, Fuyang;  Huang, Qunxing;  Zheng, Wangshu;  Xie, Hanyi;  Peng, Jiaxi;  Tuo, Rui;  Yu, Dan;  Lin, Yuchen;  Li, Wenzhe;  Zheng, Yongfang;  Fang, Xiaocui;  Zou, Yimin;  Wang, Huayi;  Wang, Mengting;  Weiss, Paul S.;  Yang, Yanlian;  Wang, Chen
Favorite  |  View/Download:88/0  |  Submit date:2019/03/05
Improved matrix pooling 期刊论文
STATISTICAL METHODS IN MEDICAL RESEARCH, 2019, 卷号: 28, 期号: 1, 页码: 211-222
Authors:  Xiong, Wenjun;  Ding, Juan;  He, Yuanzhen;  Li, Qizhai
Favorite  |  View/Download:92/0  |  Submit date:2019/03/05
Matrix pooling  efficiency  group testing  sensitivity  specificity