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OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions 期刊论文
NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: W1, 页码: W483-W490
Authors:  Chen, Shengquan;  Liu, Qiao;  Cui, Xuejian;  Feng, Zhanying;  Li, Chunquan;  Wang, Xiaowo;  Zhang, Xuegong;  Wang, Yong;  Jiang, Rui
Favorite  |  View/Download：104/0  |  Submit date：2021/10/26
Reusability report: Compressing regulatory networks to vectors for interpreting gene expression and genetic variants 期刊论文
NATURE MACHINE INTELLIGENCE, 2021, 卷号: 3, 期号: 7, 页码: 576-580
Authors:  Zeng, Wanwen;  Xin, Jingxue;  Jiang, Rui;  Wang, Yong
Favorite  |  View/Download：82/0  |  Submit date：2021/10/26
Integrating distal and proximal information to predict gene expression via a densely connected convolutional neural network 期刊论文
BIOINFORMATICS, 2020, 卷号: 36, 期号: 2, 页码: 496-503
Authors:  Zeng, Wanwen;  Wang, Yong;  Jiang, Rui
Favorite  |  View/Download：133/0  |  Submit date：2020/06/30
DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 11
Authors:  Zeng, Wanwen;  Chen, Xi;  Duren, Zhana;  Wang, Yong;  Jiang, Rui;  Wong, Wing Hung
Favorite  |  View/Download：147/0  |  Submit date：2020/01/10
TFAP2C-and p63-Dependent Networks Sequentially Rearrange Chromatin Landscapes to Drive Human Epidermal Lineage Commitment 期刊论文
CELL STEM CELL, 2019, 卷号: 24, 期号: 2, 页码: 271-+
Authors:  Li, Lingjie;  Wang, Yong;  Torkelson, Jessica L.;  Shankar, Gautam;  Pattison, Jillian M.;  Zhen, Hanson H.;  Fang, Fengqin;  Duren, Zhana;  Xin, Jingxue;  Gaddam, Sadhana;  Melo, Sandra P.;  Piekos, Samantha N.;  Li, Jiang;  Liaw, Eric J.;  Chen, Lang;  Li, Rui;  Wernig, Marius;  Wong, Wing H.;  Chang, Howard Y.;  Oro, Anthony E.
Favorite  |  View/Download：220/0  |  Submit date：2019/03/11
Gene co-opening network deciphers gene functional relationships 期刊论文
MOLECULAR BIOSYSTEMS, 2017, 卷号: 13, 期号: 11, 页码: 2428-2439
Authors:  Li, Wenran;  Wang, Meng;  Sun, Jinghao;  Wang, Yong;  Jiang, Rui
Favorite  |  View/Download：115/0  |  Submit date：2018/07/30
Modeling gene regulation from paired expression and chromatin accessibility data 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2017, 卷号: 114, 期号: 25, 页码: E4914-E4923
Authors:  Duren, Zhana;  Chen, Xi;  Jiang, Rui;  Wang, Yong;  Wong, Wing Hung
Favorite  |  View/Download：127/0  |  Submit date：2018/07/30
gene regulation  transcription factor  regulatory element  chromatin regulator  chromatin activity  
Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data 期刊论文
NUCLEIC ACIDS RESEARCH, 2017, 卷号: 45, 期号: 10, 页码: 5666-5677
Authors:  Zamanighomi, Mahdi;  Lin, Zhixiang;  Wang, Yong;  Jiang, Rui;  Wong, Wing Hung
Favorite  |  View/Download：117/0  |  Submit date：2018/07/30
Efficient Fisher Discrimination Dictionary Learning 期刊论文
SIGNAL PROCESSING, 2016, 卷号: 128, 页码: 28-39
Authors:  Jiang, Rui;  Qiao, Hong;  Zhang, Bo
Favorite  |  View/Download：92/0  |  Submit date：2018/07/30
Fisher discrimination dictionary learning  Nesterov's accelerated gradient method  Face recognition  Domain adaptation  
Modeling the causal regulatory network by integrating chromatin accessibility and transcriptome data 期刊论文
NATIONAL SCIENCE REVIEW, 2016, 卷号: 3, 期号: 2, 页码: 240-251
Authors:  Wang, Yong;  Jiang, Rui;  Wong, Wing Hung
Favorite  |  View/Download：90/0  |  Submit date：2018/07/30
gene regulatory network  open chromatin  DNA accessibility  transcription factor colocalization  statistical model  data integration