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NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis 期刊论文
BMC SYSTEMS BIOLOGY, 2017, 卷号: 11, 页码: 14
作者:  Sun, Duanchen;  Liu, Yinliang;  Zhang, Xiang-Sun;  Wu, Ling-Yun
收藏  |  浏览/下载：134/0  |  提交时间：2018/07/30
Gene ontology  Enrichment analysis  Network-based probabilistic generative model  Integer programming  Complex diseases  
Quantitative function and algorithm for community detection in bipartite networks 期刊论文
INFORMATION SCIENCES, 2016, 卷号: 367, 页码: 874-889
作者:  Li, Zhenping;  Wang, Rui-Sheng;  Zhang, Shihua;  Zhang, Xiang-Sun
收藏  |  浏览/下载：169/0  |  提交时间：2018/07/30
Bipartite network  Community  Quantitative function  Integer programming  Label propagation algorithm  
Two-stage flux balance analysis of metabolic networks for drug target identification 期刊论文
BMC SYSTEMS BIOLOGY, 2011, 卷号: 5, 页码: 11
作者:  Li, Zhenping;  Wang, Rui-Sheng;  Zhang, Xiang-Sun
收藏  |  浏览/下载：123/0  |  提交时间：2018/07/30
Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains 期刊论文
BMC SYSTEMS BIOLOGY, 2010, 卷号: 4, 页码: 12
作者:  Liu, Zhi-Ping;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：138/0  |  提交时间：2018/07/30
Prediction of protein-RNA binding sites by a random forest method with combined features 期刊论文
BIOINFORMATICS, 2010, 卷号: 26, 期号: 13, 页码: 1616-1622
作者:  Liu, Zhi-Ping;  Wu, Ling-Yun;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：144/0  |  提交时间：2018/07/30
Identifying differentially expressed pathways via a mixed integer linear programming model 期刊论文
IET SYSTEMS BIOLOGY, 2009, 卷号: 3, 期号: 6, 页码: 475-486
作者:  Qiu, Y-Q.;  Zhang, S.;  Zhang, X. -S.;  Chen, L.
收藏  |  浏览/下载：90/0  |  提交时间：2018/07/30
Remarks on Network Community Properties 期刊论文
JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY, 2008, 卷号: 21, 期号: 4, 页码: 637-644
作者:  Wang, Jiguang;  Qiu, Yuqing;  Wang, Ruisheng;  Zhang, Xiangsun
收藏  |  浏览/下载：103/0  |  提交时间：2018/07/30
Community  complex network  modularity  modularity density  
Predicting gene ontology functions from protein's regional surface structures 期刊论文
BMC BIOINFORMATICS, 2007, 卷号: 8, 页码: 13
作者:  Liu, Zhi-Ping;  Wu, Ling-Yun;  Wang, Yong;  Chen, Luonan;  Zhang, Xiang-Sun
收藏  |  浏览/下载：160/0  |  提交时间：2018/07/30
Identification of overlapping community structure in complex networks using fuzzy c-means clustering 期刊论文
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2007, 卷号: 374, 期号: 1, 页码: 483-490
作者:  Zhang, Shihua;  Wang, Rui-Sheng;  Zhang, Xiang-Sun
收藏  |  浏览/下载：133/0  |  提交时间：2018/07/30
overlapping community structure  modular function  spectral mapping  fuzzy c-means clustering  complex network  
Identification of functional modules in a PPI network by clique percolation clustering 期刊论文
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2006, 卷号: 30, 期号: 6, 页码: 445-451
作者:  Zhang, Shihua;  Ning, Xuemei;  Zhang, Xiang-Sun
收藏  |  浏览/下载：128/0  |  提交时间：2018/07/30
protein-protein interaction (PPI) network  network clustering  protein complexes  functional modules  clique percolation clustering