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Interaction-based transcriptome analysis via differential network inference 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 11
作者:  Leng, Jiacheng;  Wu, Ling-Yun
收藏  |  浏览/下载:54/0  |  提交时间:2023/02/07
differential network inference  differential expression analysis  interaction-based transcriptome analysis  
Dynamic semiparametric transformation models for recurrent event data with a terminal event 期刊论文
STATISTICS IN MEDICINE, 2022, 页码: 16
作者:  Jin, Jin;  Song, Xinyuan;  Sun, Liuquan
收藏  |  浏览/下载:76/0  |  提交时间:2023/02/07
dynamic regression  marginal modeling  recurrent events  terminal event  time-varying coefficients  transformation models  
Prediction of the transcription factor binding sites with meta-learning 期刊论文
METHODS, 2022, 卷号: 203, 页码: 207-213
作者:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
收藏  |  浏览/下载:195/0  |  提交时间:2023/02/07
Convolution neural network  Transcription factor binding sites  Meta learning  Noisy labels data  
Augmented weighting estimators for the additive rates model under multivariate recurrent event data with missing event type 期刊论文
STATISTICS IN MEDICINE, 2022, 页码: 14
作者:  Ma, Huijuan;  Pang, Weicai;  Sun, Liuquan;  Xu, Wei
收藏  |  浏览/下载:101/0  |  提交时间:2023/02/07
additive rates model  missing at random  multivariate recurrent event data  Nadaraya-Watson kernel estimator  weighted estimating equation  
Deciphering the Spatial Modular Patterns of Tissues by Integrating Spatial and Single-Cell Transcriptomic Data 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14
作者:  Shan, Xu;  Chen, Jinyu;  Dong, Kangning;  Zhou, Wei;  Zhang, Shihua
收藏  |  浏览/下载:87/0  |  提交时间:2023/02/07
data integration  single-cell transcriptomics  spatial modular patterns  spatial transcriptomics  
A simulation study to examine the impact of recombination on phylogenomic inferences under the multispecies coalescent model 期刊论文
MOLECULAR ECOLOGY, 2022, 页码: 16
作者:  Zhu, Tianqi;  Flouri, Tomas;  Yang, Ziheng
收藏  |  浏览/下载:133/0  |  提交时间:2022/04/29
BPP  introgression  MSci  multispecies coalescent  recombination  species delimitation  species tree  
BiTSC2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 12
作者:  Chen, Ziwei;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
收藏  |  浏览/下载:194/0  |  提交时间:2022/06/21
single-cell DNA sequencing  intra-tumor heterogeneity  single nucleotide variation  copy number alteration  Bayesian modeling  cancer evolution  
Annotating regulatory elements by heterogeneous network embedding 期刊论文
BIOINFORMATICS, 2022, 页码: 13
作者:  Lu, Yurun;  Feng, Zhanying;  Zhang, Songmao;  Wang, Yong
收藏  |  浏览/下载:146/0  |  提交时间:2022/06/21
hDirect-MAP: projection-free single-cell modeling of response to checkpoint immunotherapy 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 2, 页码: 16
作者:  Lu, Yong;  Xue, Gang;  Zheng, Ningbo;  Han, Kun;  Yang, Wenzhong;  Wang, Rui-Sheng;  Wu, Lingyun;  Miller, Lance D.;  Pardee, Timothy;  Triozzi, Pierre L.;  Lo, Hui-Wen;  Watabe, Kounosuke;  Wong, Stephen T. C.;  Pasche, Boris C.;  Zhang, Wei;  Jin, Guangxu
收藏  |  浏览/下载:140/0  |  提交时间:2023/02/07
single-cell RNA sequencing (scRNA-seq)  single-cell mass cytometry (CyTOF)  Pareto optimization  projection-free single-cell modeling  response to immune checkpoint blockade  
High attack rate in a Tong Lau house outbreak of COVID-19 with subdivided units in Hong Kong 期刊论文
INTERFACE FOCUS, 2022, 卷号: 12, 期号: 2, 页码: 11
作者:  Wang, Qun;  Lung, David Christopher;  Chan, Pak-To;  Jia, Wei;  Dung, Chung-Hin;  Miao, Te;  Huang, Jianxiang;  Chen, Wenzhao;  Wang, Zixuan;  Leung, Kai-Ming;  Xu, Pengcheng;  Lin, Zhang;  Wong, Daniel;  Tse, Herman;  Wong, Sally Cheuk Ying;  Choi, Garnet Kwan-Yue;  To, Kelvin Kai-Wang;  Cheng, Vincent Chi-Chung;  Yuen, Kwok-Yung;  Li, Yuguo
收藏  |  浏览/下载:161/0  |  提交时间:2022/04/02
COVID-19  SARS-CoV-2  poor housing  drainage system  building ventilation