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Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations 期刊论文
CURRENT BIOINFORMATICS, 2019, 卷号: 14, 期号: 1, 页码: 4-10
Authors:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
Favorite  |  View/Download:50/0  |  Submit date:2019/04/02
Biological network  network alignment  gene ontology  alignment graph  optimization  
Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 13
Authors:  Liu, Zhi-Ping;  Liu, Shutang;  Chen, Ruitang;  Huang, Xiaopeng;  Wu, Ling-Yun
Favorite  |  View/Download:40/0  |  Submit date:2018/07/30
RNA-binding pocket  Local structure classification  Structural alignment  Network clustering  Structure motif  
An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data 期刊论文
Algorithms for Molecular Biology, 2016, 卷号: 11, 期号: 1
Authors:  Lu,Jianbo;  Xu,Guoliang;  Zhang,Shihua;  Lu,Benzhuo
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Superposition  Protein structure alignment  Iterative closest point  
Protein Structure Alignment Based on Internal Coordinates 期刊论文
INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES, 2010, 卷号: 2, 期号: 4, 页码: 308-319
Authors:  Shen, Yue-Feng;  Li, Bo;  Liu, Zhi-Ping
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protein structure alignment  internal coordinate  difference matrix  structural bioinformatics  
SANA: an algorithm for sequential and non-sequential protein structure alignment 期刊论文
AMINO ACIDS, 2010, 卷号: 39, 期号: 2, 页码: 417-425
Authors:  Wang, Lin;  Wu, Ling-Yun;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
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Protein structure alignment  Fold comparison  Circular permutation  Functional sites  
Minimum Hausdorff distance under rigid motions and comparison of protein structures 期刊论文
JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY, 2009, 卷号: 22, 期号: 4, 页码: 560-586
Authors:  Li, Banghe;  Li, Bo;  Shen, Yuefeng
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Hausdorff distance  pattern matching  pattern recognition  protein structure alignment  
Evaluating Protein Similarity from Coarse Structures 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2009, 卷号: 6, 期号: 4, 页码: 583-593
Authors:  Wang, Yong;  Wu, Ling-Yun;  Zhang, Ji-Hong;  Zhan, Zhong-Wei;  Zhang, Xiang-Sun;  Chen, Luonan
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Protein structure  structure comparison  protein surface  
Recognition of Structure Similarities in Proteins 期刊论文
JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY, 2008, 卷号: 21, 期号: 4, 页码: 665-675
Authors:  Wang, Lin;  Qiu, Yuqing;  Wang, Jiguang;  Zhang, Xiangsun
Favorite  |  View/Download:10/0  |  Submit date:2018/07/30
Binding site alignment  circular permutations  flexible alignment  protein structure alignment  protein structure retrieval  
Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparison 期刊论文
BMC STRUCTURAL BIOLOGY, 2006, 卷号: 6, 页码: 14
Authors:  Chen, Luonan;  Wu, Ling-Yun;  Wang, Yong;  Zhang, Shihua;  Zhang, Xiang-Sun
Favorite  |  View/Download:37/0  |  Submit date:2018/07/30