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Controllability Analysis of a Gene Network for Arabidopsis thaliana Reveals Characteristics of Functional Gene Families 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2019, 卷号: 16, 期号: 3, 页码: 912-924
Authors:  Wang, Pei;  Wang, Daojie;  Lu, Jinhu
Favorite  |  View/Download:109/0  |  Submit date:2020/01/10
Structural controllability  Arabidopsis thaliana  gene network  functional gene  enrichment analysis  
RRCRank: a fusion method using rank strategy for residue-residue contact prediction 期刊论文
BMC Bioinformatics, 2017, 卷号: 18, 期号: 1
Authors:  Jing,Xiaoyang;  Dong,Qiwen;  Lu,Ruqian
Favorite  |  View/Download:47/0  |  Submit date:2018/07/30
Protein residue-residue contact prediction  Learning-to-rank  Fusion method  
Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 13
Authors:  Liu, Zhi-Ping;  Liu, Shutang;  Chen, Ruitang;  Huang, Xiaopeng;  Wu, Ling-Yun
Favorite  |  View/Download:83/0  |  Submit date:2018/07/30
RNA-binding pocket  Local structure classification  Structural alignment  Network clustering  Structure motif  
iSulf-Cys: Prediction of S-sulfenylation Sites in Proteins with Physicochemical Properties of Amino Acids 期刊论文
PLOS ONE, 2016, 卷号: 11, 期号: 4, 页码: 9
Authors:  Xu, Yan;  Ding, Jun;  Wu, Ling-Yun
Favorite  |  View/Download:67/0  |  Submit date:2018/07/30
Corbi: a new R package for biological network alignment and querying 期刊论文
BMC Systems Biology, 2013, 卷号: 7, 期号: Suppl 2
Authors:  Huang,Qiang;  Wu,Ling-Yun;  Zhang,Xiang-Sun
Favorite  |  View/Download:81/0  |  Submit date:2018/07/30
Protein Structure Alignment Based on Internal Coordinates 期刊论文
INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES, 2010, 卷号: 2, 期号: 4, 页码: 308-319
Authors:  Shen, Yue-Feng;  Li, Bo;  Liu, Zhi-Ping
Favorite  |  View/Download:36/0  |  Submit date:2018/07/30
protein structure alignment  internal coordinate  difference matrix  structural bioinformatics  
Predicting gene ontology functions from protein's regional surface structures 期刊论文
BMC BIOINFORMATICS, 2007, 卷号: 8, 页码: 13
Authors:  Liu, Zhi-Ping;  Wu, Ling-Yun;  Wang, Yong;  Chen, Luonan;  Zhang, Xiang-Sun
Favorite  |  View/Download:100/0  |  Submit date:2018/07/30
Discovering functions and revealing mechanisms at molecular level from biological networks 期刊论文
PROTEOMICS, 2007, 卷号: 7, 期号: 16, 页码: 2856-2869
Authors:  Zhang, Shihua;  Jin, Guangxu;  Zhang, Xiang-Sun;  Chen, Luonan
Favorite  |  View/Download:73/0  |  Submit date:2018/07/30
biological network  network analysis  network comparison  network integration  protein interaction network