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Repairing mappings across biomedical ontologies by probabilistic reasoning and belief revision 期刊论文
KNOWLEDGE-BASED SYSTEMS, 2020, 卷号: 209, 页码: 21
Authors:  Li, Weizhuo;  Zhang, Songmao
Favorite  |  View/Download:59/0  |  Submit date:2021/01/14
Mapping validation and repair  Biomedical ontologies  Probabilistic description logics  Belief revision  
Matching biomedical ontologies based on formal concept analysis 期刊论文
JOURNAL OF BIOMEDICAL SEMANTICS, 2018, 卷号: 9, 页码: 27
Authors:  Zhao, Mengyi;  Zhang, Songmao;  Li, Weizhuo;  Chen, Guowei
Favorite  |  View/Download:81/0  |  Submit date:2018/07/30
Ontology matching  Formal concept analysis  Concept lattice  
Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 13
Authors:  Liu, Zhi-Ping;  Liu, Shutang;  Chen, Ruitang;  Huang, Xiaopeng;  Wu, Ling-Yun
Favorite  |  View/Download:83/0  |  Submit date:2018/07/30
RNA-binding pocket  Local structure classification  Structural alignment  Network clustering  Structure motif  
An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data 期刊论文
Algorithms for Molecular Biology, 2016, 卷号: 11, 期号: 1
Authors:  Lu,Jianbo;  Xu,Guoliang;  Zhang,Shihua;  Lu,Benzhuo
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Superposition  Protein structure alignment  Iterative closest point  
Corbi: a new R package for biological network alignment and querying 期刊论文
BMC Systems Biology, 2013, 卷号: 7, 期号: Suppl 2
Authors:  Huang,Qiang;  Wu,Ling-Yun;  Zhang,Xiang-Sun
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Protein Structure Alignment Based on Internal Coordinates 期刊论文
INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES, 2010, 卷号: 2, 期号: 4, 页码: 308-319
Authors:  Shen, Yue-Feng;  Li, Bo;  Liu, Zhi-Ping
Favorite  |  View/Download:36/0  |  Submit date:2018/07/30
protein structure alignment  internal coordinate  difference matrix  structural bioinformatics  
A clustering approach to multireference alignment of single-particle projections in electron microscopy 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2010, 卷号: 171, 期号: 2, 页码: 197-206
Authors:  Sorzano, C. O. S.;  Bilbao-Castro, J. R.;  Shkolnisky, Y.;  Alcorlo, M.;  Melero, R.;  Caffarena-Fernandez, G.;  Li, M.;  Xu, G.;  Marabini, R.;  Carazo, J. M.
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Single-particle analysis  2D analysis  Multireference analysis  Electron microscopy  
Recognition of Structure Similarities in Proteins 期刊论文
JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY, 2008, 卷号: 21, 期号: 4, 页码: 665-675
Authors:  Wang, Lin;  Qiu, Yuqing;  Wang, Jiguang;  Zhang, Xiangsun
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Binding site alignment  circular permutations  flexible alignment  protein structure alignment  protein structure retrieval  
Comparing two approaches for aligning representations of anatomy 期刊论文
ARTIFICIAL INTELLIGENCE IN MEDICINE, 2007, 卷号: 39, 期号: 3, 页码: 227-236
Authors:  Zhang, Songmao;  Mork, Peter;  Bodenreider, Olivier;  Bernstein, Philip A.
Favorite  |  View/Download:38/0  |  Submit date:2018/07/30
ontology  anatomy  Foundational Model Anatomy (FMA)  GALEN  ontology alignment  
Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparison 期刊论文
BMC STRUCTURAL BIOLOGY, 2006, 卷号: 6, 页码: 14
Authors:  Chen, Luonan;  Wu, Ling-Yun;  Wang, Yong;  Zhang, Shihua;  Zhang, Xiang-Sun
Favorite  |  View/Download:86/0  |  Submit date:2018/07/30