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Protein evolution in yeast transcription factor subnetworks 期刊论文
NUCLEIC ACIDS RESEARCH, 2010, 卷号: 38, 期号: 18, 页码: 5959-5969
Authors:  Wang, Yong;  Franzosa, Eric A.;  Zhang, Xiang-Sun;  Xia, Yu
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SANA: an algorithm for sequential and non-sequential protein structure alignment 期刊论文
AMINO ACIDS, 2010, 卷号: 39, 期号: 2, 页码: 417-425
Authors:  Wang, Lin;  Wu, Ling-Yun;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
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Protein structure alignment  Fold comparison  Circular permutation  Functional sites  
Prediction of protein-RNA binding sites by a random forest method with combined features 期刊论文
BIOINFORMATICS, 2010, 卷号: 26, 期号: 13, 页码: 1616-1622
Authors:  Liu, Zhi-Ping;  Wu, Ling-Yun;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
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Computationally Probing Drug-Protein Interactions Via Support Vector Machine 期刊论文
LETTERS IN DRUG DESIGN & DISCOVERY, 2010, 卷号: 7, 期号: 5, 页码: 370-378
Authors:  Wang, Yong-Cui;  Yang, Zhi-Xia;  Wang, Yong;  Deng, Nai-Yang
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Drug-target interaction  Chemical structure  Protein sequence  Imbalance problem  Support vector machine  
Lysine acetylation sites prediction using an ensemble of support vector machine classifiers 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2010, 卷号: 264, 期号: 1, 页码: 130-135
Authors:  Xu, Yan;  Wang, Xiao-Bo;  Ding, Jun;  Wu, Ling-Yun;  Deng, Nai-Yang
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Bioinformatics  Acetylated proteins  Ensemble  SVM  PWMs  EnsemblePail  
Identifying translation initiation sites in prokaryotes using support vector machine 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2010, 卷号: 262, 期号: 4, 页码: 644-649
Authors:  Gao, Tingting;  Yang, Zhixia;  Wang, Yong;  Jing, Ling
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Translation initiation site prediction  Support vector machine  Position specific weight matrix  
An incremental dimensionality reduction method on discriminant information for pattern classification 期刊论文
PATTERN RECOGNITION LETTERS, 2009, 卷号: 30, 期号: 15, 页码: 1416-1423
Authors:  Hu, Xiaoqin;  Yang, Zhixia;  Jing, Ling
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Dimensionality reduction  Pattern classification  Discriminant mapping  
Prediction of palmitoylation sites using the composition of k-spaced amino acid pairs 期刊论文
PROTEIN ENGINEERING DESIGN & SELECTION, 2009, 卷号: 22, 期号: 11, 页码: 707-712
Authors:  Wang, Xiao-Bo;  Wu, Ling-Yun;  Wang, Yong-Cui;  Deng, Nai-Yang
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CKSAAP-Palm  palmitoylated proteins  palmitoylation  support vector machine  
Leave-one-out bounds for support vector ordinal regression machine 期刊论文
NEURAL COMPUTING & APPLICATIONS, 2009, 卷号: 18, 期号: 7, 页码: 731-748
Authors:  Yang, Zhixia;  Tian, Yingjie;  Deng, Naiyang
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Support vector ordinal regression machine  Leave-one-out  Leave-one-out bound  
Evaluating Protein Similarity from Coarse Structures 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2009, 卷号: 6, 期号: 4, 页码: 583-593
Authors:  Wang, Yong;  Wu, Ling-Yun;  Zhang, Ji-Hong;  Zhan, Zhong-Wei;  Zhang, Xiang-Sun;  Chen, Luonan
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Protein structure  structure comparison  protein surface