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Hierarchical graphical model reveals HFR1 bridging circadian rhythm and flower development in Arabidopsis thaliana 期刊论文
NPJ SYSTEMS BIOLOGY AND APPLICATIONS, 2019, 卷号: 5, 页码: 11
Authors:  Duren, Zhana;  Wang, Yaling;  Wang, Jiguang;  Zhao, Xing-Ming;  Lv, Le;  Li, Xiaobo;  Liu, Jingdong;  Zhu, Xin-Guang;  Chen, Luonan;  Wang, Yong
Favorite  |  View/Download:13/0  |  Submit date:2020/05/24
Simple tricks of convolutional neural network architectures improve DNA-protein binding prediction 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 11, 页码: 1837-1843
Authors:  Cao, Zhen;  Zhang, Shihua
Favorite  |  View/Download:21/0  |  Submit date:2020/01/10
Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations 期刊论文
CURRENT BIOINFORMATICS, 2019, 卷号: 14, 期号: 1, 页码: 4-10
Authors:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
Favorite  |  View/Download:24/0  |  Submit date:2019/04/02
Biological network  network alignment  gene ontology  alignment graph  optimization  
Quality control of single amino acid variations detected by tandem mass spectrometry 期刊论文
JOURNAL OF PROTEOMICS, 2018, 卷号: 187, 页码: 144-151
Authors:  Yi, Xinpei;  Wang, Bo;  An, Zhiwu;  Gong, Fuzhou;  Li, Jing;  Fu, Yan
Favorite  |  View/Download:36/0  |  Submit date:2018/11/16
Single amino acid variations  Mass spectrometry  Peptide identification  False discovery rate  Unrestrictive mass shift relocalization  
Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations 期刊论文
BMC SYSTEMS BIOLOGY, 2017, 卷号: 11, 页码: 13
Authors:  Guo, Yuzhen;  Tao, Fengying;  Wu, Zikai;  Wang, Yong
Favorite  |  View/Download:15/0  |  Submit date:2018/07/30
Protein structure prediction  HP model  3D lattice  Particle swarm optimization  Protein stability  
Gly-PseAAC: Identifying protein lysine glycation through sequences 期刊论文
GENE, 2017, 卷号: 602, 页码: 1-7
Authors:  Xu, Yan;  Li, Li;  Ding, Jun;  Wu, Ling-Yun;  Mai, Guoqin;  Zhou, Fengfeng
Favorite  |  View/Download:11/0  |  Submit date:2018/07/30
Glycation  Amino acid propensity  Support Vector Machine  
An Application of Invertibility of Boolean Control Networks to the Control of the Mammalian Cell Cycle 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2017, 卷号: 14, 期号: 1, 页码: 225-229
Authors:  Zhang, Kuize;  Zhang, Lijun;  Mou, Shaoshuai
Favorite  |  View/Download:6/0  |  Submit date:2018/07/30
Boolean control network  invertibility  mammalian cell cycle  
Accurate prediction of protein-protein interactions by integrating potential evolutionary information embedded in PSSM profile and discriminative vector machine classifier 期刊论文
ONCOTARGET, 2017, 卷号: 8, 期号: 14, 页码: 23638-23649
Authors:  Li, Zheng-Wei;  You, Zhu-Hong;  Chen, Xing;  Li, Li-Ping;  Huang, De-Shuang;  Yan, Gui-Ying;  Nie, Ru;  Huang, Yu-An
Favorite  |  View/Download:12/0  |  Submit date:2018/07/30
disease  position-specific scoring matrix  weber local descriptor  cancer  protein-protein interactions  
Improved protein-protein interactions prediction via weighted sparse representation model combining continuous wavelet descriptor and PseAA composition 期刊论文
BMC SYSTEMS BIOLOGY, 2016, 卷号: 10, 页码: 10
Authors:  Huang, Yu-An;  You, Zhu-Hong;  Chen, Xing;  Yan, Gui-Ying
Favorite  |  View/Download:24/0  |  Submit date:2018/07/30
Protein-protein interactions  Protein sequence  Continuous wavelet transform  Sparse representation based classifier  
An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data 期刊论文
Algorithms for Molecular Biology, 2016, 卷号: 11, 期号: 1
Authors:  Lu,Jianbo;  Xu,Guoliang;  Zhang,Shihua;  Lu,Benzhuo
Favorite  |  View/Download:14/0  |  Submit date:2018/07/30
Superposition  Protein structure alignment  Iterative closest point