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Computational probing protein-protein interactions targeting small molecules 期刊论文
BIOINFORMATICS, 2016, 卷号: 32, 期号: 2, 页码: 226-234
Authors:  Wang, Yong-Cui;  Chen, Shi-Long;  Deng, Nai-Yang;  Wang, Yong
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Phogly-PseAAC: Prediction of lysine phosphoglycerylation in proteins incorporating with position-specific propensity 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2015, 卷号: 379, 页码: 10-15
Authors:  Xu, Yan;  Ding, Ya-Xin;  Ding, Jun;  Wu, Ling-Yun;  Deng, Nai-Yang
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Amino acid propensity  F-score  Phosphoglycerylation  
iSuc-PseAAC: predicting lysine succinylation in proteins by incorporating peptide position-specific propensity 期刊论文
SCIENTIFIC REPORTS, 2015, 卷号: 5, 页码: 6
Authors:  Xu, Yan;  Ding, Ya-Xin;  Ding, Jun;  Lei, Ya-Hui;  Wu, Ling-Yun;  Deng, Nai-Yang
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Kernel-based data fusion improves the drug-protein interaction prediction 期刊论文
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2011, 卷号: 35, 期号: 6, 页码: 353-362
Authors:  Wang, Yong-Cui;  Zhang, Chun-Hua;  Deng, Nai-Yang;  Wang, Yong
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Drug-target interaction  Chemical space  Pharmacological space  Therapeutic space  Genomic space  Kernel function  Support vector machine  
Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation 期刊论文
BMC BIOINFORMATICS, 2011, 卷号: 12, 页码: 9
Authors:  Ren, Xianwen;  Wang, Yong-Cui;  Wang, Yong;  Zhang, Xiang-Sun;  Deng, Nai-Yang
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Support vector machine prediction of enzyme function with conjoint triad feature and hierarchical context 期刊论文
BMC SYSTEMS BIOLOGY, 2011, 卷号: 5, 页码: 11
Authors:  Wang, Yong-Cui;  Wang, Yong;  Yang, Zhi-Xia;  Deng, Nai-Yang
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Computationally Probing Drug-Protein Interactions Via Support Vector Machine 期刊论文
LETTERS IN DRUG DESIGN & DISCOVERY, 2010, 卷号: 7, 期号: 5, 页码: 370-378
Authors:  Wang, Yong-Cui;  Yang, Zhi-Xia;  Wang, Yong;  Deng, Nai-Yang
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Drug-target interaction  Chemical structure  Protein sequence  Imbalance problem  Support vector machine  
Lysine acetylation sites prediction using an ensemble of support vector machine classifiers 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2010, 卷号: 264, 期号: 1, 页码: 130-135
Authors:  Xu, Yan;  Wang, Xiao-Bo;  Ding, Jun;  Wu, Ling-Yun;  Deng, Nai-Yang
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Bioinformatics  Acetylated proteins  Ensemble  SVM  PWMs  EnsemblePail  
Prediction of palmitoylation sites using the composition of k-spaced amino acid pairs 期刊论文
PROTEIN ENGINEERING DESIGN & SELECTION, 2009, 卷号: 22, 期号: 11, 页码: 707-712
Authors:  Wang, Xiao-Bo;  Wu, Ling-Yun;  Wang, Yong-Cui;  Deng, Nai-Yang
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CKSAAP-Palm  palmitoylated proteins  palmitoylation  support vector machine