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Annotating regulatory elements by heterogeneous network embedding 期刊论文
BIOINFORMATICS, 2022, 页码: 13
作者:  Lu, Yurun;  Feng, Zhanying;  Zhang, Songmao;  Wang, Yong
收藏  |  浏览/下载：139/0  |  提交时间：2022/06/21
MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 6, 页码: 14
作者:  Zou, Meng;  Duren, Zhana;  Yuan, Qiuyue;  Li, Henry;  Hutchins, Andrew Paul;  Wong, Wing Hung;  Wang, Yong
收藏  |  浏览/下载：146/0  |  提交时间：2022/04/02
cell type-specific marker  TFs  surface markers  dimension reduction  hierarchical topology  
Chromatin accessibility landscape and regulatory network of high-altitude hypoxia adaptation 期刊论文
NATURE COMMUNICATIONS, 2020, 卷号: 11, 期号: 1, 页码: 20
作者:  Xin, Jingxue;  Zhang, Hui;  He, Yaoxi;  Duren, Zhana;  Bai, Caijuan;  Chen, Lang;  Luo, Xin;  Yan, Dong-Sheng;  Zhang, Chaoyu;  Zhu, Xiang;  Yuan, Qiuyue;  Feng, Zhanying;  Cui, Chaoying;  Qi, Xuebin;  Ouzhuluobu;  Wong, Wing Hung;  Wang, Yong;  Su, Bing
收藏  |  浏览/下载：177/0  |  提交时间：2021/01/14
scTIM: seeking cell-type-indicative marker from single cell RNA-seq data by consensus optimization 期刊论文
BIOINFORMATICS, 2020, 卷号: 36, 期号: 8, 页码: 2474-2485
作者:  Feng, Zhanying;  Ren, Xianwen;  Fang, Yuan;  Yin, Yining;  Huang, Chutian;  Zhao, Yimin;  Wang, Yong
收藏  |  浏览/下载：182/0  |  提交时间：2020/06/30
Time course regulatory analysis based on paired expression and chromatin accessibility data 期刊论文
GENOME RESEARCH, 2020, 卷号: 30, 期号: 4, 页码: 622-634
作者:  Duren, Zhana;  Chen, Xi;  Xin, Jingxue;  Wang, Yong;  Wong, Wing Hung
收藏  |  浏览/下载：178/0  |  提交时间：2020/06/30
ELF: Extract Landmark Features By Optimizing Topology Maintenance, Redundancy, and Specificity 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 411-421
作者:  Feng, Zhan-Ying;  Wang, Yong
收藏  |  浏览/下载：186/0  |  提交时间：2020/05/24
Feature extraction  Topology  Ground penetrating radar  Geophysical measurement techniques  Redundancy  Maintenance engineering  Manganese  Feature selection  topology maintenance  optimization  single cell  
ZokorDB: tissue specific regulatory network annotation for non-coding elements of plateau zokor 期刊论文
定量生物学:英文版, 2020, 卷号: 8.0, 期号: 1.0, 页码: 43-50
作者:  Jingxue Xin;  Junjun Hao;  Lang Chen;  Tao Zhang;  Lei Li;  Luonan Chen;  Wenmin Zhao;  Xuemei Lu;  Peng Shi;  Yong Wang
收藏  |  浏览/下载：176/0  |  提交时间：2021/01/14
tissue  specific  regulatory  network  non-coding  element  plateau  zokor  non-model  species  
zokordbtissuespecificregulatorynetworkannotationfornoncodingelementsofplateauzokor 期刊论文
quantitativebiology, 2020, 卷号: 8, 期号: 1, 页码: 43-50
作者:  Xin Jingxue;  Hao Junjun;  Chen Lang;  Zhang Tao;  Li Lei;  Chen Luonan;  Zhao Wenmin;  Lu Xuemei;  Shi Peng;  Wang Yong
收藏  |  浏览/下载：203/0  |  提交时间：2020/06/30
tissue specific regulatory network  non-coding element  plateau zokor  non-model species  
DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 11
作者:  Zeng, Wanwen;  Chen, Xi;  Duren, Zhana;  Wang, Yong;  Jiang, Rui;  Wong, Wing Hung
收藏  |  浏览/下载：183/0  |  提交时间：2020/01/10
Revealing transcription factor and histone modification co-localization and dynamics across cell lines by integrating ChIP-seq and RNA-seq data 期刊论文
BMC GENOMICS, 2018, 卷号: 19, 页码: 16
作者:  Zhang, Lirong;  Xue, Gaogao;  Liu, Junjie;  Li, Qianzhong;  Wang, Yong
收藏  |  浏览/下载：273/0  |  提交时间：2019/01/11
Transcription factor  Histone modification  Co-localization  Dynamics