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A simulation study to examine the impact of recombination on phylogenomic inferences under the multispecies coalescent model 期刊论文
MOLECULAR ECOLOGY, 2022, 页码: 16
Authors:  Zhu, Tianqi;  Flouri, Tomas;  Yang, Ziheng
Favorite  |  View/Download:41/0  |  Submit date:2022/04/29
BPP  introgression  MSci  multispecies coalescent  recombination  species delimitation  species tree  
Complexity of the simplest species tree problem 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2021, 卷号: 38, 期号: 9, 页码: 3993-4009
Authors:  Zhu, Tianqi;  Yang, Ziheng
Favorite  |  View/Download:36/0  |  Submit date:2022/04/02
concatenation  efficiency  molecular clock  MSC  multispecies coalescent  species tree  
zokordbtissuespecificregulatorynetworkannotationfornoncodingelementsofplateauzokor 期刊论文
quantitativebiology, 2020, 卷号: 8, 期号: 1, 页码: 43-50
Authors:  Xin Jingxue;  Hao Junjun;  Chen Lang;  Zhang Tao;  Li Lei;  Chen Luonan;  Zhao Wenmin;  Lu Xuemei;  Shi Peng;  Wang Yong
Favorite  |  View/Download:111/0  |  Submit date:2020/06/30
tissue specific regulatory network  non-coding element  plateau zokor  non-model species  
ZokorDB: tissue specific regulatory network annotation for non-coding elements of plateau zokor 期刊论文
定量生物学:英文版, 2020, 卷号: 8.0, 期号: 1.0, 页码: 43-50
Authors:  Jingxue Xin;  Junjun Hao;  Lang Chen;  Tao Zhang;  Lei Li;  Luonan Chen;  Wenmin Zhao;  Xuemei Lu;  Peng Shi;  Yong Wang
Favorite  |  View/Download:80/0  |  Submit date:2021/01/14
tissue  specific  regulatory  network  non-coding  element  plateau  zokor  non-model  species  
Homoclinic bifurcation of a state feedback impulsive controlled prey-predator system with Holling-II functional response 期刊论文
NONLINEAR DYNAMICS, 2019, 卷号: 98, 期号: 2, 页码: 929-942
Authors:  Zhang, Meng;  Chen, Lansun;  Li, Zeyu
Favorite  |  View/Download:62/0  |  Submit date:2020/05/24
State feedback  Impulsive model  Homoclinic bifurcation  Order-1 periodic solution  
Controllability Analysis of a Gene Network for Arabidopsis thaliana Reveals Characteristics of Functional Gene Families 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2019, 卷号: 16, 期号: 3, 页码: 912-924
Authors:  Wang, Pei;  Wang, Daojie;  Lu, Jinhu
Favorite  |  View/Download:109/0  |  Submit date:2020/01/10
Structural controllability  Arabidopsis thaliana  gene network  functional gene  enrichment analysis  
Lipid-gene regulatory network reveals coregulations of triacylglycerol with phosphatidylinositol/lysophosphatidylinositol and with hexosyl-ceramide 期刊论文
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS, 2019, 卷号: 1864, 期号: 2, 页码: 168-180
Authors:  Wang, Wei;  Xin, Jingxue;  Yang, Xiao;  Lam, Sin Man;  Shui, Guanghou;  Wang, Yong;  Huang, Xun
Favorite  |  View/Download:167/0  |  Submit date:2019/03/05
Lipid homeostasis  TAG  PI  HexCer  Metabolic reprogramming  
The Spectre of Too Many Species 期刊论文
SYSTEMATIC BIOLOGY, 2019, 卷号: 68, 期号: 1, 页码: 168-181
Authors:  Leache, Adam D.;  Zhu, Tianqi;  Rannala, Bruce;  Yang, Ziheng
Favorite  |  View/Download:109/0  |  Submit date:2020/01/10
bpp  multispecies coalescent  Species delimitation  taxonomy  
Prevalence of cryptic species in morphologically uniform taxa - Fast speciation and evolutionary radiation in Asian frogs 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2018, 卷号: 127, 页码: 723-731
Authors:  Liu, Zuyao;  Chen, Guoling;  Zhu, Tianqi;  Zeng, Zhaochi;  Lyu, Zhitong;  Wang, Jian;  Messenger, Kevin;  Greenberg, Anthony;  Guo, Zixiao;  Yang, Ziheng;  Shi, Suhua;  Wang, Yingyong
Favorite  |  View/Download:113/0  |  Submit date:2019/01/11
Cryptic species  Delimitation  Diversity  Megophrys  Phylogeography  
BAUM: improving genome assembly by adaptive unique mapping and local overlap-layout-consensus approach 期刊论文
BIOINFORMATICS, 2018, 卷号: 34, 期号: 12, 页码: 2019-2028
Authors:  Wang, Anqi;  Wang, Zhanyu;  Li, Zheng;  Li, Lei M.
Favorite  |  View/Download:84/0  |  Submit date:2018/07/30