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Multiple-Tissue and Multilevel Analysis on Differentially Expressed Genes and Differentially Correlated Gene Pairs for HFpEF 期刊论文
FRONTIERS IN GENETICS, 2021, 卷号: 12, 页码: 14
作者:  Zhou, Guofeng;  Sun, Shaoyan;  Yuan, Qiuyue;  Zhang, Run;  Jiang, Ping;  Li, Guangyu;  Wang, Yong;  Li, Xiao
收藏  |  浏览/下载：166/0  |  提交时间：2021/10/26
heart failure with preserved ejection fraction  differentially expressed genes  differentially correlated gene pairs  differential network  molecular docking  
Identification of Common Driver Gene Modules and Associations between Cancers through Integrated Network Analysis 期刊论文
GLOBAL CHALLENGES, 2021, 页码: 13
作者:  Gao, Bo;  Zhao, Yue;  Gao, Yonghang;  Li, Guojun;  Wu, Ling-Yun
收藏  |  浏览/下载：234/0  |  提交时间：2021/10/26
driver gene module  gene mutation  mutual exclusivity  network analysis  signaling pathway  
Controllability Analysis of a Gene Network for Arabidopsis thaliana Reveals Characteristics of Functional Gene Families 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2019, 卷号: 16, 期号: 3, 页码: 912-924
作者:  Wang, Pei;  Wang, Daojie;  Lu, Jinhu
收藏  |  浏览/下载：221/0  |  提交时间：2020/01/10
Structural controllability  Arabidopsis thaliana  gene network  functional gene  enrichment analysis  
Finite-time adaptive stability of gene regulatory networks 期刊论文
NEUROCOMPUTING, 2019, 卷号: 338, 页码: 222-232
作者:  Wu, Lulu;  Liu, Kexin;  Lu, Jinhu;  Gu, Haibo
收藏  |  浏览/下载：195/0  |  提交时间：2020/01/10
Gene regulatory network  Adaptive control  Finite-time stability  Switching topology  
Discovering cooperative biomarkers for heterogeneous complex disease diagnoses 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 89-101
作者:  Sun, Duanchen;  Ren, Xianwen;  Ari, Eszter;  Korcsmaros, Tamas;  Csermely, Peter;  Wu, Ling-Yun
收藏  |  浏览/下载：377/0  |  提交时间：2019/03/05
heterogeneous diseases  cancer biomarker  network-based  cooperative biomarker  gene expression  
Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations 期刊论文
CURRENT BIOINFORMATICS, 2019, 卷号: 14, 期号: 1, 页码: 4-10
作者:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
收藏  |  浏览/下载：216/0  |  提交时间：2019/04/02
Biological network  network alignment  gene ontology  alignment graph  optimization  
NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis 期刊论文
BMC SYSTEMS BIOLOGY, 2017, 卷号: 11, 页码: 14
作者:  Sun, Duanchen;  Liu, Yinliang;  Zhang, Xiang-Sun;  Wu, Ling-Yun
收藏  |  浏览/下载：155/0  |  提交时间：2018/07/30
Gene ontology  Enrichment analysis  Network-based probabilistic generative model  Integer programming  Complex diseases  
Modeling the causal regulatory network by integrating chromatin accessibility and transcriptome data 期刊论文
NATIONAL SCIENCE REVIEW, 2016, 卷号: 3, 期号: 2, 页码: 240-251
作者:  Wang, Yong;  Jiang, Rui;  Wong, Wing Hung
收藏  |  浏览/下载：148/0  |  提交时间：2018/07/30
gene regulatory network  open chromatin  DNA accessibility  transcription factor colocalization  statistical model  data integration  
Graphical Features of Functional Genes in Human Protein Interaction Network 期刊论文
IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS, 2016, 卷号: 10, 期号: 3, 页码: 707-720
作者:  Wang, Pei;  Chen, Yao;  Lu, Jinhu;  Wang, Qingyun;  Yu, Xinghuo
收藏  |  浏览/下载：168/0  |  提交时间：2018/07/30
Cluster  disease classification  functional gene  human protein interaction network  receiver operating characteristic (ROC) curve  topological structure  
A linear programming model based on network flow for pathway inference 期刊论文
JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY, 2010, 卷号: 23, 期号: 5, 页码: 971-977
作者:  Ren, Xianwen;  Zhang, Xiang-Sun
收藏  |  浏览/下载：130/0  |  提交时间：2018/07/30
Gene expression  linear programming  network flow  pathway inference  protein interaction network