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Understanding the acceleration phenomenon via high-resolution differential equations 期刊论文
MATHEMATICAL PROGRAMMING, 2022, 卷号: 195, 期号: 1-2, 页码: 79-148
作者:  Shi, Bin;  Du, Simon S.;  Jordan, Michael, I;  Su, Weijie J.
收藏  |  浏览/下载：73/0  |  提交时间：2023/02/07
Convex optimization  First-order method  Polyak's heavy ball method  Nesterov's accelerated gradient methods  Ordinary differential equation  Lyapunov function  Gradient minimization  
BiTSC2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 12
作者:  Chen, Ziwei;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
收藏  |  浏览/下载：172/0  |  提交时间：2022/06/21
single-cell DNA sequencing  intra-tumor heterogeneity  single nucleotide variation  copy number alteration  Bayesian modeling  cancer evolution  
Development of accurate and robust genuinely two-dimensional HLL-type Riemann solver for compressible flows 期刊论文
COMPUTERS & FLUIDS, 2020, 卷号: 213, 页码: 15
作者:  Hu, Lijun;  Yuan, Li;  Zhao, Kunlei
收藏  |  浏览/下载：131/0  |  提交时间：2021/04/26
Euler equations  HLL-type Riemann solver  Genuinely two-dimensional  Zha-Bilgen splitting  Carbuncle phenomenon  Shock instability  
Comparison of Computational Methods for Imputing Single-Cell RNA-Sequencing Data 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 376-389
作者:  Zhang, Lihua;  Zhang, Shihua
收藏  |  浏览/下载：164/0  |  提交时间：2020/05/24
Gene expression  Sequential analysis  Bioinformatics  RNA  Matrix converters  Computational biology  Bayes methods  Single-cell RNA-sequencing technique  dropout event  imputation  algorithm  bioinformatics  
DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 11
作者:  Zeng, Wanwen;  Chen, Xi;  Duren, Zhana;  Wang, Yong;  Jiang, Rui;  Wong, Wing Hung
收藏  |  浏览/下载：183/0  |  提交时间：2020/01/10
A direct imaging method for half-space inverse elastic scattering problems 期刊论文
Inverse Problems, 2019, 卷号: 35, 期号: 7
作者:  Chen,Zhiming;  Zhou,Shiqi
收藏  |  浏览/下载：163/0  |  提交时间：2019/10/28
reverse-time migration  elastic wave  direct imaging method  
TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data 期刊论文
BMC GENOMICS, 2019, 卷号: 20, 页码: 16
作者:  An, Shaokun;  Ma, Liang;  Wan, Lin
收藏  |  浏览/下载：199/0  |  提交时间：2019/10/28
Nonlinear dimensionality reduction  Elastic embedding  Visualization  Single-cell RNA sequencing  Time series  Cell fate decisions  Gene expression pattern  Oscillation  In-group proportion  
VORTEX STRUCTURES FOR SOME GEOMETRIC FLOWS FROM PSEUDO-EUCLIDEAN SPACES 期刊论文
DISCRETE AND CONTINUOUS DYNAMICAL SYSTEMS, 2019, 卷号: 39, 期号: 4, 页码: 1745-1777
作者:  Jiang, Ruiqi;  Wang, Youde;  Yang, Jun
收藏  |  浏览/下载：171/0  |  提交时间：2019/03/05
Wave map equations  Schrodinger flows  Landau-Lifshitz equations  Vortices  
Revealing transcription factor and histone modification co-localization and dynamics across cell lines by integrating ChIP-seq and RNA-seq data 期刊论文
BMC GENOMICS, 2018, 卷号: 19, 页码: 16
作者:  Zhang, Lirong;  Xue, Gaogao;  Liu, Junjie;  Li, Qianzhong;  Wang, Yong
收藏  |  浏览/下载：273/0  |  提交时间：2019/01/11
Transcription factor  Histone modification  Co-localization  Dynamics  
Higher Cohomology Vanishing of Line Bundles on Generalized Springer Resolution 期刊论文
FUNCTIONAL ANALYSIS AND ITS APPLICATIONS, 2018, 卷号: 52, 期号: 3, 页码: 214-223
作者:  Hu, Yue
收藏  |  浏览/下载：122/0  |  提交时间：2019/01/11
Kostka-Shoji polynomials  cohomology vanishing  quivers  Lusztig convolution diagram