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NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis 期刊论文
BMC SYSTEMS BIOLOGY, 2017, 卷号: 11, 页码: 14
作者:  Sun, Duanchen;  Liu, Yinliang;  Zhang, Xiang-Sun;  Wu, Ling-Yun
收藏  |  浏览/下载：138/0  |  提交时间：2018/07/30
Gene ontology  Enrichment analysis  Network-based probabilistic generative model  Integer programming  Complex diseases  
Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs 期刊论文
BMC Bioinformatics, 2012, 卷号: 13, 期号: Suppl 7
作者:  Liu,Zhi-Ping;  Wang,Jiguang;  Qiu,Yu-Qing;  Leung,Ross KK;  Zhang,Xiang-Sun;  Tsui,Stephen KW;  Chen,Luonan
收藏  |  浏览/下载：109/0  |  提交时间：2018/07/30
An efficient network querying method based on conditional random fields 期刊论文
BIOINFORMATICS, 2011, 卷号: 27, 期号: 22, 页码: 3173-3178
作者:  Huang, Qiang;  Wu, Ling-Yun;  Zhang, Xiang-Sun
收藏  |  浏览/下载：134/0  |  提交时间：2018/07/30
Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation 期刊论文
BMC BIOINFORMATICS, 2011, 卷号: 12, 页码: 9
作者:  Ren, Xianwen;  Wang, Yong-Cui;  Wang, Yong;  Zhang, Xiang-Sun;  Deng, Nai-Yang
收藏  |  浏览/下载：143/0  |  提交时间：2018/07/30
NOA: a novel Network Ontology Analysis method 期刊论文
NUCLEIC ACIDS RESEARCH, 2011, 卷号: 39, 期号: 13, 页码: 12
作者:  Wang, Jiguang;  Huang, Qiang;  Liu, Zhi-Ping;  Wang, Yong;  Wu, Ling-Yun;  Chen, Luonan;  Zhang, Xiang-Sun
收藏  |  浏览/下载：163/0  |  提交时间：2018/07/30
Detecting and analyzing differentially activated pathways in brain regions of Alzheimer's disease patients 期刊论文
MOLECULAR BIOSYSTEMS, 2011, 卷号: 7, 期号: 5, 页码: 1441-1452
作者:  Liu, Zhi-Ping;  Wang, Yong;  Zhang, Xiang-Sun;  Xia, Weiming;  Chen, Luonan
收藏  |  浏览/下载：145/0  |  提交时间：2018/07/30
Protein evolution in yeast transcription factor subnetworks 期刊论文
NUCLEIC ACIDS RESEARCH, 2010, 卷号: 38, 期号: 18, 页码: 5959-5969
作者:  Wang, Yong;  Franzosa, Eric A.;  Zhang, Xiang-Sun;  Xia, Yu
收藏  |  浏览/下载：144/0  |  提交时间：2018/07/30
A linear programming model based on network flow for pathway inference 期刊论文
JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY, 2010, 卷号: 23, 期号: 5, 页码: 971-977
作者:  Ren, Xianwen;  Zhang, Xiang-Sun
收藏  |  浏览/下载：111/0  |  提交时间：2018/07/30
Gene expression  linear programming  network flow  pathway inference  protein interaction network  
Determining modular organization of protein interaction networks by maximizing modularity density 期刊论文
BMC SYSTEMS BIOLOGY, 2010, 卷号: 4, 页码: 12
作者:  Zhang, Shihua;  Ning, Xue-Mei;  Ding, Chris;  Zhang, Xiang-Sun
收藏  |  浏览/下载：147/0  |  提交时间：2018/07/30
Prediction of protein-RNA binding sites by a random forest method with combined features 期刊论文
BIOINFORMATICS, 2010, 卷号: 26, 期号: 13, 页码: 1616-1622
作者:  Liu, Zhi-Ping;  Wu, Ling-Yun;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：152/0  |  提交时间：2018/07/30