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Prediction of enhancer-promoter interactions using the cross-cell type information and domain adversarial neural network 期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 16
作者:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
收藏  |  浏览/下载：152/0  |  提交时间：2021/01/14
Enhancer–  promoter interactions  Cell line  Convolutional neural network  Transfer learning  Gradient reversal layer  
Prediction of enhancer–promoter interactions using the cross-cell type information and domain adversarial neural network 期刊论文
BMC Bioinformatics, 2020, 卷号: 21, 期号: 1
作者:  Jing,Fang;  Zhang,Shao-Wu;  Zhang,Shihua
收藏  |  浏览/下载：152/0  |  提交时间：2021/01/14
Enhancer–promoter interactions  Cell line  Convolutional neural network  Transfer learning  Gradient reversal layer  
NeuralEE: A GPU-Accelerated Elastic Embedding Dimensionality Reduction Method for Visualizing Large-Scale scRNA-Seq Data 期刊论文
FRONTIERS IN GENETICS, 2020, 卷号: 11, 页码: 8
作者:  Xiong, Jiankang;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
收藏  |  浏览/下载：202/0  |  提交时间：2021/01/14
single-cell RNA sequencing  elastic embedding  neural networks  large-scale  stochastic optimization  parametric models  generalizable models  
Chromatin accessibility landscape and regulatory network of high-altitude hypoxia adaptation 期刊论文
NATURE COMMUNICATIONS, 2020, 卷号: 11, 期号: 1, 页码: 20
作者:  Xin, Jingxue;  Zhang, Hui;  He, Yaoxi;  Duren, Zhana;  Bai, Caijuan;  Chen, Lang;  Luo, Xin;  Yan, Dong-Sheng;  Zhang, Chaoyu;  Zhu, Xiang;  Yuan, Qiuyue;  Feng, Zhanying;  Cui, Chaoying;  Qi, Xuebin;  Ouzhuluobu;  Wong, Wing Hung;  Wang, Yong;  Su, Bing
收藏  |  浏览/下载：191/0  |  提交时间：2021/01/14
A General Joint Matrix Factorization Framework for Data Integration and Its Systematic Algorithmic Exploration 期刊论文
IEEE TRANSACTIONS ON FUZZY SYSTEMS, 2020, 卷号: 28, 期号: 9, 页码: 1971-1983
作者:  Zhang, Lihua;  Zhang, Shihua
收藏  |  浏览/下载：155/0  |  提交时间：2021/01/14
Sparse matrices  Pattern recognition  Data integration  Prediction algorithms  Data models  Matrix decomposition  Signal processing algorithms  Bioinformatics  data integration  network-regularized constraint  nonnegative matrix factorization (NMF)  pattern recognition  
Deep spatial-temporal structure learning for rumor detection on Twitter 期刊论文
NEURAL COMPUTING & APPLICATIONS, 2020, 页码: 11
作者:  Huang, Qi;  Zhou, Chuan;  Wu, Jia;  Liu, Luchen;  Wang, Bin
收藏  |  浏览/下载：173/0  |  提交时间：2020/09/23
Rumor detection  Spatial-temporal structure learning  
3Scover: Identifying Safeguard TF from Cell Type-TF Specificity Network by an Extended Minimum Set Cover Model 期刊论文
ISCIENCE, 2020, 卷号: 23, 期号: 6, 页码: 31
作者:  Yuan, Qiuyue;  Wang, Yong
收藏  |  浏览/下载：155/0  |  提交时间：2020/09/23
The scale -invariant space for attention layer in neural network 期刊论文
NEUROCOMPUTING, 2020, 卷号: 392, 页码: 1-10
作者:  Wang, Yue;  Liu, Yuting;  Ma, Zhi-Ming
收藏  |  浏览/下载：181/0  |  提交时间：2020/06/30
Probe Efficient Feature Representation of Gapped K-mer Frequency Vectors from Sequences Using Deep Neural Networks 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 657-667
作者:  Cao, Zhen;  Zhang, Shihua
收藏  |  浏览/下载：205/0  |  提交时间：2020/05/24
DNA  Bioinformatics  Kernel  Feature extraction  Support vector machines  Genomics  Task analysis  Bioinformatics  machine learning  gapped k-mer  deep neural network  transcription factor binding site prediction  
On weak Pareto optimality of nonatomic routing networks 期刊论文
JOURNAL OF COMBINATORIAL OPTIMIZATION, 2020, 页码: 19
作者:  Chen, Xujin;  Diao, Zhuo;  Hu, Xiaodong
收藏  |  浏览/下载：178/0  |  提交时间：2020/05/24
Nonatomic selfish routing  Nash equilibrium  Weakly Pareto optimal  Multi-commodity network