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OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions 期刊论文
NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: W1, 页码: W483-W490
作者:  Chen, Shengquan;  Liu, Qiao;  Cui, Xuejian;  Feng, Zhanying;  Li, Chunquan;  Wang, Xiaowo;  Zhang, Xuegong;  Wang, Yong;  Jiang, Rui
收藏  |  浏览/下载:152/0  |  提交时间:2021/10/26
hReg-CNCC reconstructs a regulatory network in human cranial neural crest cells and annotates variants in a developmental context 期刊论文
COMMUNICATIONS BIOLOGY, 2021, 卷号: 4, 期号: 1, 页码: 16
作者:  Feng, Zhanying;  Duren, Zhana;  Xiong, Ziyi;  Wang, Sijia;  Liu, Fan;  Wong, Wing Hung;  Wang, Yong
收藏  |  浏览/下载:203/0  |  提交时间:2021/06/01
Modeling gene regulation from paired expression and chromatin accessibility data 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2017, 卷号: 114, 期号: 25, 页码: E4914-E4923
作者:  Duren, Zhana;  Chen, Xi;  Jiang, Rui;  Wang, Yong;  Wong, Wing Hung
收藏  |  浏览/下载:174/0  |  提交时间:2018/07/30
gene regulation  transcription factor  regulatory element  chromatin regulator  chromatin activity  
Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data 期刊论文
NUCLEIC ACIDS RESEARCH, 2017, 卷号: 45, 期号: 10, 页码: 5666-5677
作者:  Zamanighomi, Mahdi;  Lin, Zhixiang;  Wang, Yong;  Jiang, Rui;  Wong, Wing Hung
收藏  |  浏览/下载:157/0  |  提交时间:2018/07/30
Modeling the causal regulatory network by integrating chromatin accessibility and transcriptome data 期刊论文
NATIONAL SCIENCE REVIEW, 2016, 卷号: 3, 期号: 2, 页码: 240-251
作者:  Wang, Yong;  Jiang, Rui;  Wong, Wing Hung
收藏  |  浏览/下载:135/0  |  提交时间:2018/07/30
gene regulatory network  open chromatin  DNA accessibility  transcription factor colocalization  statistical model  data integration  
A systematic method to identify modulation of transcriptional regulation via chromatin activity reveals regulatory network during mESC differentiation 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 12
作者:  Duren, Zhana;  Wang, Yong
收藏  |  浏览/下载:157/0  |  提交时间:2018/07/30
Chemoattraction of macrophages by secretory molecules derived from cells expressing the signal peptide of eosinophil cationic protein 期刊论文
BMC Systems Biology, 2012, 卷号: 6, 期号: 1
作者:  Liu,Yu-Shu;  Tsai,Pei-Wen;  Wang,Yong;  Fan,Tan-chi;  Hsieh,Chia-Hung;  Chang,Margaret Dah-Tsyr;  Pai,Tun-Wen;  Huang,Chien-Fu;  Lan,Chung-Yu;  Chang,Hao-Teng
收藏  |  浏览/下载:162/0  |  提交时间:2018/07/30
Eosinophil cationic protein (ECP)  Signal peptide  Inflammation  Functional linkage network  Cell migration  
Involvement of a helix-loop-helix transcription factor CHC-1 in CO2-mediated conidiation suppression in Neurospora crassa 期刊论文
FUNGAL GENETICS AND BIOLOGY, 2011, 卷号: 48, 期号: 12, 页码: 1077-1086
作者:  Sun, Xianyun;  Zhang, Hanxing;  Zhang, Zhenying;  Wang, Yong;  Li, Shaojie
收藏  |  浏览/下载:132/0  |  提交时间:2018/07/30
Conidiation  chc-1  fluffy  Neurospora crassa  
Predicting DNA- and RNA-binding proteins from sequences with kernel methods 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2009, 卷号: 258, 期号: 2, 页码: 289-293
作者:  Shao, Xiaojian;  Tian, Yingjie;  Wu, Lingyun;  Wang, Yong;  Jing, Ling;  Deng, Naiyang
收藏  |  浏览/下载:153/0  |  提交时间:2018/07/30
Bioinformatics  Protein function  Conjoint triad  Nucleic-acid-binding protein  Support vector machine