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Prediction of the transcription factor binding sites with meta-learning 期刊论文
METHODS, 2022, 卷号: 203, 页码: 207-213
作者:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
收藏  |  浏览/下载：281/0  |  提交时间：2023/02/07
Convolution neural network  Transcription factor binding sites  Meta learning  Noisy labels data  
Deciphering spatial domains from spatially resolved transcriptomics with an adaptive graph attention auto-encoder 期刊论文
NATURE COMMUNICATIONS, 2022, 卷号: 13, 期号: 1, 页码: 12
作者:  Dong, Kangning;  Zhang, Shihua
收藏  |  浏览/下载：136/0  |  提交时间：2022/06/21
Disease category-specific annotation of variants using an ensemble learning framework 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 1, 页码: 15
作者:  Cao, Zhen;  Huang, Yanting;  Duan, Ran;  Jin, Peng;  Qin, Zhaohui S.;  Zhang, Shihua
收藏  |  浏览/下载：176/0  |  提交时间：2022/06/21
complex disease  disease category  functional annotation  non-coding variant  ensemble learning  
Network diffusion for scalable embedding of massive single-cell ATAC-seq data 期刊论文
SCIENCE BULLETIN, 2021, 卷号: 66, 期号: 22, 页码: 2271-2276
作者:  Dong, Kangning;  Zhang, Shihua
收藏  |  浏览/下载：146/0  |  提交时间：2022/04/02
Approximate distance correlation for selecting highly interrelated genes across datasets 期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2021, 卷号: 17, 期号: 11, 页码: 18
作者:  Shen, Qunlun;  Zhang, Shihua
收藏  |  浏览/下载：154/0  |  提交时间：2022/04/02
Robust Bayesian matrix decomposition with mixture of Gaussian noise 期刊论文
NEUROCOMPUTING, 2021, 卷号: 449, 页码: 108-116
作者:  Wang, Haohui;  Zhang, Chihao;  Zhang, Shihua
收藏  |  浏览/下载：179/0  |  提交时间：2021/10/26
Bayesian method  Matrix decomposition  Maximum a posterior  Mixture of Gaussians  
Joint reconstruction of cis-regulatory interaction networks across multiple tissues using single-cell chromatin accessibility data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 3, 页码: 15
作者:  Dong, Kangning;  Zhang, Shihua
收藏  |  浏览/下载：154/0  |  提交时间：2022/04/02
cis-regulatory interaction networks  single-cell ATAC-seq  Gaussian graphical LASSO  
Bayesian Joint Matrix Decomposition for Data Integration with Heterogeneous Noise 期刊论文
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2021, 卷号: 43, 期号: 4, 页码: 1184-1196
作者:  Zhang, Chihao;  Zhang, Shihua
收藏  |  浏览/下载：244/0  |  提交时间：2021/04/26
Matrix decomposition  Bayes methods  Data integration  Inference algorithms  Data models  Data mining  Gaussian distribution  Bayesian methods  matrix decomposition  data integration  variational Bayesian inference  maximum a posterior  
Decarbonizing China's power sector by 2030 with consideration of technological progress and cross-regional power transmission 期刊论文
ENERGY POLICY, 2021, 卷号: 150, 页码: 14
作者:  Xiao, Jin;  Li, Guohao;  Xie, Ling;  Wang, Shouyang;  Yu, Lean
收藏  |  浏览/下载：177/0  |  提交时间：2021/06/01
Decarbonization  Power sector  Structural optimization  Technology learning curve  Cross-regional power transmission  
Towards understanding residual and dilated dense neural networks via convolutional sparse coding 期刊论文
NATIONAL SCIENCE REVIEW, 2021, 卷号: 8, 期号: 3, 页码: 13
作者:  Zhang, Zhiyang;  Zhang, Shihua
收藏  |  浏览/下载：181/0  |  提交时间：2021/10/26
convolutional neural network  convolutional sparse coding  residual neural network  mixed-scale dense neural network  dilated convolution  dense connection