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Annotating regulatory elements by heterogeneous network embedding 期刊论文
BIOINFORMATICS, 2022, 页码: 13
Authors:  Lu, Yurun;  Feng, Zhanying;  Zhang, Songmao;  Wang, Yong
Favorite  |  View/Download:53/0  |  Submit date:2022/06/21
Disease category-specific annotation of variants using an ensemble learning framework 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 1, 页码: 15
Authors:  Cao, Zhen;  Huang, Yanting;  Duan, Ran;  Jin, Peng;  Qin, Zhaohui S.;  Zhang, Shihua
Favorite  |  View/Download:38/0  |  Submit date:2022/06/21
complex disease  disease category  functional annotation  non-coding variant  ensemble learning  
OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions 期刊论文
NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: W1, 页码: W483-W490
Authors:  Chen, Shengquan;  Liu, Qiao;  Cui, Xuejian;  Feng, Zhanying;  Li, Chunquan;  Wang, Xiaowo;  Zhang, Xuegong;  Wang, Yong;  Jiang, Rui
Favorite  |  View/Download:64/0  |  Submit date:2021/10/26
GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes 期刊论文
GENOME RESEARCH, 2019, 卷号: 29, 期号: 4, 页码: 682-696
Authors:  Shao, Yi;  Chen, Chunyan;  Shen, Hao;  He, Bin Z.;  Yu, Daqi;  Jiang, Shuai;  Zhao, Shilei;  Gao, Zhiqiang;  Zhu, Zhenglin;  Chen, Xi;  Fu, Yan;  Chen, Hua;  Gao, Ge;  Long, Manyuan;  Zhang, Yong E.
Favorite  |  View/Download:112/0  |  Submit date:2020/01/10
Kernel-based data fusion improves the drug-protein interaction prediction 期刊论文
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2011, 卷号: 35, 期号: 6, 页码: 353-362
Authors:  Wang, Yong-Cui;  Zhang, Chun-Hua;  Deng, Nai-Yang;  Wang, Yong
Favorite  |  View/Download:81/0  |  Submit date:2018/07/30
Drug-target interaction  Chemical space  Pharmacological space  Therapeutic space  Genomic space  Kernel function  Support vector machine  
Sequence-based protein-protein interaction prediction via support vector machine 期刊论文
JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY, 2010, 卷号: 23, 期号: 5, 页码: 1012-1023
Authors:  Wang, Yongcui;  Wang, Jiguang;  Yang, Zhixia;  Deng, Naiyang
Favorite  |  View/Download:42/0  |  Submit date:2018/07/30
Imbalance problem  protein-protein interactions  sequence-based  support vector machine  
Prediction of protein-RNA binding sites by a random forest method with combined features 期刊论文
BIOINFORMATICS, 2010, 卷号: 26, 期号: 13, 页码: 1616-1622
Authors:  Liu, Zhi-Ping;  Wu, Ling-Yun;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
Favorite  |  View/Download:107/0  |  Submit date:2018/07/30
Computationally Probing Drug-Protein Interactions Via Support Vector Machine 期刊论文
LETTERS IN DRUG DESIGN & DISCOVERY, 2010, 卷号: 7, 期号: 5, 页码: 370-378
Authors:  Wang, Yong-Cui;  Yang, Zhi-Xia;  Wang, Yong;  Deng, Nai-Yang
Favorite  |  View/Download:73/0  |  Submit date:2018/07/30
Drug-target interaction  Chemical structure  Protein sequence  Imbalance problem  Support vector machine  
sequencebasedproteinproteininteractionpredictionviasupportvectormachine 期刊论文
journalofsystemsscienceandcomplexity, 2010, 卷号: 2010, 期号: 23, 页码: 1012-1023
Authors:  Wang Yongcui;  Wang Jiguang;  Yang Zhixia;  Deng Naiyang
Favorite  |  View/Download:53/0  |  Submit date:2020/01/10
A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks 期刊论文
INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS, 2009, 卷号: 3, 期号: 1, 页码: 68-84
Authors:  Zhang, Shihua;  Liu, Hong-Wei;  Ning, Xue-Mei;  Zhang, Xiang-Sun
Favorite  |  View/Download:83/0  |  Submit date:2018/07/30
PPI  protein-protein interaction network  network clustering  LGT  line graph transformation  protein complexes  functional modules  data mining  bioinformatics