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A semismooth Newton based augmented Lagrangian method for nonsmooth optimization on matrix manifolds 期刊论文
MATHEMATICAL PROGRAMMING, 2022, 页码: 61
作者:  Zhou, Yuhao;  Bao, Chenglong;  Ding, Chao;  Zhu, Jun
收藏  |  浏览/下载：68/0  |  提交时间：2023/02/07
Nonsmooth manifold optimization  Semismooth Newton method  Augmented Lagrangian method  Riemannian manifold  
Adversarial Information Bottleneck 期刊论文
IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, 2022, 页码: 10
作者:  Zhai, Penglong;  Zhang, Shihua
收藏  |  浏览/下载：56/0  |  提交时间：2023/02/07
Robustness  Optimization  Mutual information  Deep learning  Perturbation methods  Training  Task analysis  Adversarial robustness  deep learning  hyperparameter selection  information bottleneck (IB)  
hDirect-MAP: projection-free single-cell modeling of response to checkpoint immunotherapy 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 2, 页码: 16
作者:  Lu, Yong;  Xue, Gang;  Zheng, Ningbo;  Han, Kun;  Yang, Wenzhong;  Wang, Rui-Sheng;  Wu, Lingyun;  Miller, Lance D.;  Pardee, Timothy;  Triozzi, Pierre L.;  Lo, Hui-Wen;  Watabe, Kounosuke;  Wong, Stephen T. C.;  Pasche, Boris C.;  Zhang, Wei;  Jin, Guangxu
收藏  |  浏览/下载：128/0  |  提交时间：2023/02/07
single-cell RNA sequencing (scRNA-seq)  single-cell mass cytometry (CyTOF)  Pareto optimization  projection-free single-cell modeling  response to immune checkpoint blockade  
A Comprehensive Survey on Community Detection With Deep Learning 期刊论文
IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, 2022, 页码: 21
作者:  Su, Xing;  Xue, Shan;  Liu, Fanzhen;  Wu, Jia;  Yang, Jian;  Zhou, Chuan;  Hu, Wenbin;  Paris, Cecile;  Nepal, Surya;  Jin, Di;  Sheng, Quan Z.;  Yu, Philip S.
收藏  |  浏览/下载：148/0  |  提交时间：2022/04/29
Deep learning  Taxonomy  Optimization  Partitioning algorithms  Clustering algorithms  Social networking (online)  Peer-to-peer computing  Community detection  deep learning  graph neural network  network representation  social networks  
One-Shot Neural Architecture Search: Maximising Diversity to Overcome Catastrophic Forgetting 期刊论文
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2021, 卷号: 43, 期号: 9, 页码: 2921-2935
作者:  Zhang, Miao;  Li, Huiqi;  Pan, Shirui;  Chang, Xiaojun;  Zhou, Chuan;  Ge, Zongyuan;  Su, Steven
收藏  |  浏览/下载：165/0  |  提交时间：2021/10/26
Computer architecture  Training  Optimization  Neural networks  Search methods  Australia  Germanium  AutoML  neural architecture search  continual learning  catastrophic forgetting  novelty search  
NeuralEE: A GPU-Accelerated Elastic Embedding Dimensionality Reduction Method for Visualizing Large-Scale scRNA-Seq Data 期刊论文
FRONTIERS IN GENETICS, 2020, 卷号: 11, 页码: 8
作者:  Xiong, Jiankang;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
收藏  |  浏览/下载：183/0  |  提交时间：2021/01/14
single-cell RNA sequencing  elastic embedding  neural networks  large-scale  stochastic optimization  parametric models  generalizable models  
ELF: Extract Landmark Features By Optimizing Topology Maintenance, Redundancy, and Specificity 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 411-421
作者:  Feng, Zhan-Ying;  Wang, Yong
收藏  |  浏览/下载：190/0  |  提交时间：2020/05/24
Feature extraction  Topology  Ground penetrating radar  Geophysical measurement techniques  Redundancy  Maintenance engineering  Manganese  Feature selection  topology maintenance  optimization  single cell  
Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations 期刊论文
CURRENT BIOINFORMATICS, 2019, 卷号: 14, 期号: 1, 页码: 4-10
作者:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
收藏  |  浏览/下载：183/0  |  提交时间：2019/04/02
Biological network  network alignment  gene ontology  alignment graph  optimization  
Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations 期刊论文
BMC SYSTEMS BIOLOGY, 2017, 卷号: 11, 页码: 13
作者:  Guo, Yuzhen;  Tao, Fengying;  Wu, Zikai;  Wang, Yong
收藏  |  浏览/下载：162/0  |  提交时间：2018/07/30
Protein structure prediction  HP model  3D lattice  Particle swarm optimization  Protein stability  
Convex optimization learning of faithful Euclidean distance representations in nonlinear dimensionality reduction 期刊论文
MATHEMATICAL PROGRAMMING, 2017, 卷号: 164, 期号: 1-2, 页码: 341-381
作者:  Ding, Chao;  Qi, Hou-Duo
收藏  |  浏览/下载：169/0  |  提交时间：2018/07/30
Euclidean distance matrix  Convex matrix optimization  Multidimensional scaling  Nonlinear dimensionality reduction  Low-rank matrix  Error bounds  Random graph models