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Prediction of the transcription factor binding sites with meta-learning 期刊论文
METHODS, 2022, 卷号: 203, 页码: 207-213
作者:  Jing, Fang;  Zhang, Shao-Wu;  Zhang, Shihua
收藏  |  浏览/下载：184/0  |  提交时间：2023/02/07
Convolution neural network  Transcription factor binding sites  Meta learning  Noisy labels data  
Deciphering spatial domains from spatially resolved transcriptomics with an adaptive graph attention auto-encoder 期刊论文
NATURE COMMUNICATIONS, 2022, 卷号: 13, 期号: 1, 页码: 12
作者:  Dong, Kangning;  Zhang, Shihua
收藏  |  浏览/下载：107/0  |  提交时间：2022/06/21
Disease category-specific annotation of variants using an ensemble learning framework 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 1, 页码: 15
作者:  Cao, Zhen;  Huang, Yanting;  Duan, Ran;  Jin, Peng;  Qin, Zhaohui S.;  Zhang, Shihua
收藏  |  浏览/下载：144/0  |  提交时间：2022/06/21
complex disease  disease category  functional annotation  non-coding variant  ensemble learning  
Network diffusion for scalable embedding of massive single-cell ATAC-seq data 期刊论文
SCIENCE BULLETIN, 2021, 卷号: 66, 期号: 22, 页码: 2271-2276
作者:  Dong, Kangning;  Zhang, Shihua
收藏  |  浏览/下载：120/0  |  提交时间：2022/04/02
Approximate distance correlation for selecting highly interrelated genes across datasets 期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2021, 卷号: 17, 期号: 11, 页码: 18
作者:  Shen, Qunlun;  Zhang, Shihua
收藏  |  浏览/下载：122/0  |  提交时间：2022/04/02
Robust model selection with covariables missing at random 期刊论文
ANNALS OF THE INSTITUTE OF STATISTICAL MATHEMATICS, 2021, 页码: 19
作者:  Liang, Zhongqi;  Wang, Qihua;  Wei, Yuting
收藏  |  浏览/下载：139/0  |  提交时间：2022/04/02
Model selection  Inverse probability weight  Model misspecification  Missing at random  Kullback-Leibler divergence  Robust  
Robust Bayesian matrix decomposition with mixture of Gaussian noise 期刊论文
NEUROCOMPUTING, 2021, 卷号: 449, 页码: 108-116
作者:  Wang, Haohui;  Zhang, Chihao;  Zhang, Shihua
收藏  |  浏览/下载：152/0  |  提交时间：2021/10/26
Bayesian method  Matrix decomposition  Maximum a posterior  Mixture of Gaussians  
Bias-corrected Kullback-Leibler distance criterion based model selection with covariables missing at random 期刊论文
COMPUTATIONAL STATISTICS & DATA ANALYSIS, 2021, 卷号: 160, 页码: 18
作者:  Wei, Yuting;  Wang, Qihua;  Duan, Xiaogang;  Qin, Jing
收藏  |  浏览/下载：133/0  |  提交时间：2021/10/26
Pseudo empirical likelihood  Missing covariates  Bias correction  
Surrogate-variable-based model-free feature screening for survival data under the general censoring mechanism 期刊论文
ANNALS OF THE INSTITUTE OF STATISTICAL MATHEMATICS, 2021, 页码: 19
作者:  Zhang, Jing;  Wang, Qihua;  Wang, Xuan
收藏  |  浏览/下载：152/0  |  提交时间：2021/10/26
Feature screening  Model-free  Sure screening property  Survival data  Ultrahigh dimensionality  
Joint reconstruction of cis-regulatory interaction networks across multiple tissues using single-cell chromatin accessibility data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 3, 页码: 15
作者:  Dong, Kangning;  Zhang, Shihua
收藏  |  浏览/下载：121/0  |  提交时间：2022/04/02
cis-regulatory interaction networks  single-cell ATAC-seq  Gaussian graphical LASSO