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BiTSC2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 12
作者:  Chen, Ziwei;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
收藏  |  浏览/下载：172/0  |  提交时间：2022/06/21
single-cell DNA sequencing  intra-tumor heterogeneity  single nucleotide variation  copy number alteration  Bayesian modeling  cancer evolution  
Multi-scale analysis of schizophrenia risk genes, brain structure, and clinical symptoms reveals integrative clues for subtyping schizophrenia patients 期刊论文
JOURNAL OF MOLECULAR CELL BIOLOGY, 2019, 卷号: 11, 期号: 8, 页码: 678-687
作者:  Ma, Liang;  Rolls, Edmund T.;  Liu, Xiuqin;  Liu, Yuting;  Jiao, Zeyu;  Wang, Yue;  Gong, Weikang;  Ma, Zhiming;  Gong, Fuzhou;  Wan, Lin
收藏  |  浏览/下载：221/0  |  提交时间：2020/05/24
Schizophrenia  PANSS  multi-scale analysis  hot cluster  grey matter volume  pathway  
DensityPath: an algorithm to visualize and reconstruct cell state-transition path on density landscape for single-cell RNA sequencing data 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 15, 页码: 2593-2601
作者:  Chen, Ziwei;  An, Shaokun;  Bai, Xiangqi;  Gong, Fuzhou;  Ma, Liang;  Wan, Lin
收藏  |  浏览/下载：193/0  |  提交时间：2020/01/10
TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data 期刊论文
BMC GENOMICS, 2019, 卷号: 20, 页码: 16
作者:  An, Shaokun;  Ma, Liang;  Wan, Lin
收藏  |  浏览/下载：197/0  |  提交时间：2019/10/28
Nonlinear dimensionality reduction  Elastic embedding  Visualization  Single-cell RNA sequencing  Time series  Cell fate decisions  Gene expression pattern  Oscillation  In-group proportion  
"Brain Connectivity Deviates by Sex and Hemisphere in the First Episode of Schizophrenia"A Route to the Genetic Basis of Language and Psychosis? 期刊论文
SCHIZOPHRENIA BULLETIN, 2019, 卷号: 45, 期号: 2, 页码: 484-494
作者:  Wang, Qiang;  Zhang, Jie;  Liu, Zhaowen;  Crow, Tim J.;  Zhang, Kai;  Palaniyappan, Lena;  Li, Mingli;  Zhao, Liansheng;  Li, Xiaojing;  Deng, Wei;  Guo, Wanjun;  Ma, Xiaohong;  Cheng, Wei;  Ma, Liang;  Wan, Lin;  Lu, Guangming;  Liu, Zhening;  Wang, Jijun;  Feng, Jianfeng;  Li, Tao
收藏  |  浏览/下载：231/0  |  提交时间：2020/01/10
resting-state fMRI  whole-brain functional connectivity analysis  sex-effect  lateralization  language  PCDH11XY  sexual selection  
A remark on copy number variation detection methods 期刊论文
PLOS ONE, 2018, 卷号: 13, 期号: 4, 页码: 11
作者:  Li, Shuo;  Dou, Xialiang;  Gao, Ruiqi;  Ge, Xinzhou;  Qian, Minping;  Wan, Lin
收藏  |  浏览/下载：144/0  |  提交时间：2018/07/30
Estimating Phred scores of Illumina base calls by logistic regression and sparse modeling 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 14
作者:  Zhang, Sheng;  Wang, Bo;  Wan, Lin;  Li, Lei M.
收藏  |  浏览/下载：139/0  |  提交时间：2018/07/30
Base-calling  Logistic regression  Quality score  L-1 regularization  AIC  BIC  Empirical discrimination power  
Functional connectivity decreases in autism in emotion, self, and face circuits identified by Knowledge-based Enrichment Analysis 期刊论文
NEUROIMAGE, 2017, 卷号: 148, 页码: 169-178
作者:  Cheng, Wei;  Rolls, Edmund T.;  Zhang, Jie;  Sheng, Wenbo;  Ma, Liang;  Wan, Lin;  Luo, Qiang;  Feng, Jianfeng
收藏  |  浏览/下载：120/0  |  提交时间：2018/07/30
Autism spectrum disorder  Neurosynth database  Orbitofrontal cortex  Precuneus  Resting state fMRI