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A Comprehensive Survey on Community Detection With Deep Learning 期刊论文
IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, 2022, 页码: 21
作者:  Su, Xing;  Xue, Shan;  Liu, Fanzhen;  Wu, Jia;  Yang, Jian;  Zhou, Chuan;  Hu, Wenbin;  Paris, Cecile;  Nepal, Surya;  Jin, Di;  Sheng, Quan Z.;  Yu, Philip S.
收藏  |  浏览/下载:147/0  |  提交时间:2022/04/29
Deep learning  Taxonomy  Optimization  Partitioning algorithms  Clustering algorithms  Social networking (online)  Peer-to-peer computing  Community detection  deep learning  graph neural network  network representation  social networks  
Multi-Level Comparative Framework Based on Gene Pair-Wise Expression Across Three Insulin Target Tissues for Type 2 Diabetes 期刊论文
FRONTIERS IN GENETICS, 2019, 卷号: 10, 页码: 16
作者:  Sun, Shaoyan;  Sung, Fengnan;  Wang, Yong
收藏  |  浏览/下载:198/0  |  提交时间:2020/01/10
type 2 diabetes  gene pairwise expression  dysfunctional interactions  multi-level analysis  random walk with restart  
Lipid-gene regulatory network reveals coregulations of triacylglycerol with phosphatidylinositol/lysophosphatidylinositol and with hexosyl-ceramide 期刊论文
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS, 2019, 卷号: 1864, 期号: 2, 页码: 168-180
作者:  Wang, Wei;  Xin, Jingxue;  Yang, Xiao;  Lam, Sin Man;  Shui, Guanghou;  Wang, Yong;  Huang, Xun
收藏  |  浏览/下载:276/0  |  提交时间:2019/03/05
Lipid homeostasis  TAG  PI  HexCer  Metabolic reprogramming  
Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 13
作者:  Liu, Zhi-Ping;  Liu, Shutang;  Chen, Ruitang;  Huang, Xiaopeng;  Wu, Ling-Yun
收藏  |  浏览/下载:149/0  |  提交时间:2018/07/30
RNA-binding pocket  Local structure classification  Structural alignment  Network clustering  Structure motif  
Local community extraction in directed networks 期刊论文
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2016, 卷号: 452, 页码: 258-265
作者:  Ning, Xuemei;  Liu, Zhaoqi;  Zhang, Shihua
收藏  |  浏览/下载:135/0  |  提交时间:2018/07/30
Complex network  Community structure  Clustering  Optimization  
IIIDB: a database for isoform-isoform interactions and isoform network modules 期刊论文
BMC Genomics, 2015, 卷号: 16, 期号: Suppl 2
作者:  Tseng,Yu-Ting;  Li,Wenyuan;  Chen,Ching-Hsien;  Zhang,Shihua;  Chen,Jeremy JW;  Zhou,Xianghong Jasmine;  Liu,Chun-Chi
收藏  |  浏览/下载:142/0  |  提交时间:2018/07/30
Approximation Algorithms for Soft-Capacitated Facility Location in Capacitated Network Design 期刊论文
ALGORITHMICA, 2009, 卷号: 53, 期号: 3, 页码: 263-297
作者:  Chen, Xujin;  Chen, Bo
收藏  |  浏览/下载:129/0  |  提交时间:2018/07/30
Facility location  Network design  Soft capacity  Approximation algorithm  Performance guarantee  
A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks 期刊论文
INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS, 2009, 卷号: 3, 期号: 1, 页码: 68-84
作者:  Zhang, Shihua;  Liu, Hong-Wei;  Ning, Xue-Mei;  Zhang, Xiang-Sun
收藏  |  浏览/下载:207/0  |  提交时间:2018/07/30
PPI  protein-protein interaction network  network clustering  LGT  line graph transformation  protein complexes  functional modules  data mining  bioinformatics  
Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures 期刊论文
NEUROCOMPUTING, 2008, 卷号: 72, 期号: 1-3, 页码: 134-141
作者:  Wang, Rui-Sheng;  Zhang, Shihua;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载:135/0  |  提交时间:2018/07/30
Complex networks  Biological networks  Community structure  Nonnegative matrix factorization  Similarity measure  
Identification of overlapping community structure in complex networks using fuzzy c-means clustering 期刊论文
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2007, 卷号: 374, 期号: 1, 页码: 483-490
作者:  Zhang, Shihua;  Wang, Rui-Sheng;  Zhang, Xiang-Sun
收藏  |  浏览/下载:133/0  |  提交时间:2018/07/30
overlapping community structure  modular function  spectral mapping  fuzzy c-means clustering  complex network