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Approximate distance correlation for selecting highly interrelated genes across datasets 期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2021, 卷号: 17, 期号: 11, 页码: 18
Authors:  Shen, Qunlun;  Zhang, Shihua
Favorite  |  View/Download:36/0  |  Submit date:2022/04/02
Bayesian Joint Matrix Decomposition for Data Integration with Heterogeneous Noise 期刊论文
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2021, 卷号: 43, 期号: 4, 页码: 1184-1196
Authors:  Zhang, Chihao;  Zhang, Shihua
Favorite  |  View/Download:85/0  |  Submit date:2021/04/26
Matrix decomposition  Bayes methods  Data integration  Inference algorithms  Data models  Data mining  Gaussian distribution  Bayesian methods  matrix decomposition  data integration  variational Bayesian inference  maximum a posterior  
A kernel non-negative matrix factorization framework for single cell clustering 期刊论文
APPLIED MATHEMATICAL MODELLING, 2021, 卷号: 90, 页码: 875-888
Authors:  Jiang, Hao;  Yi, Ming;  Zhang, Shihua
Favorite  |  View/Download:61/0  |  Submit date:2021/04/26
Single cell RNA-sequencing  Kernel non-negative matrix factorization  Cellular heterogeneity  
A General Joint Matrix Factorization Framework for Data Integration and Its Systematic Algorithmic Exploration 期刊论文
IEEE TRANSACTIONS ON FUZZY SYSTEMS, 2020, 卷号: 28, 期号: 9, 页码: 1971-1983
Authors:  Zhang, Lihua;  Zhang, Shihua
Favorite  |  View/Download:71/0  |  Submit date:2021/01/14
Sparse matrices  Pattern recognition  Data integration  Prediction algorithms  Data models  Matrix decomposition  Signal processing algorithms  Bioinformatics  data integration  network-regularized constraint  nonnegative matrix factorization (NMF)  pattern recognition  
Network-Regularized Sparse Logistic Regression Models for Clinical Risk Prediction and Biomarker Discovery 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2018, 卷号: 15, 期号: 3, 页码: 944-953
Authors:  Min, Wenwen;  Liu, Juan;  Zhang, Shihua
Favorite  |  View/Download:169/0  |  Submit date:2018/07/30
Sparse logistic regression  network-regularized penalty  survival risk prediction  feature selection  
The Discovery of Mutated Driver Pathways in Cancer: Models and Algorithms 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2018, 卷号: 15, 期号: 3, 页码: 988-998
Authors:  Zhang, Junhua;  Zhang, Shihua
Favorite  |  View/Download:139/0  |  Submit date:2018/07/30
Bioinformatics  cancer genomics  driver gene  driver pathway  mutual exclusivity  co-occurring mutation  
Integrative cancer genomics: models, algorithms and analysis 期刊论文
FRONTIERS OF COMPUTER SCIENCE, 2017, 卷号: 11, 期号: 3, 页码: 392-406
Authors:  Chen, Jinyu;  Zhang, Shihua
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cancer genomics  model  algorithm  data integration  bioinformatics  computational biology  
integrativecancergenomicsmodelsalgorithmsandanalysis 期刊论文
frontiersofcomputerscience, 2017, 卷号: 11, 期号: 3, 页码: 392
Authors:  Chen Jinyu;  Zhang Shihua
Favorite  |  View/Download:62/0  |  Submit date:2020/01/10
An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data 期刊论文
Algorithms for Molecular Biology, 2016, 卷号: 11, 期号: 1
Authors:  Lu,Jianbo;  Xu,Guoliang;  Zhang,Shihua;  Lu,Benzhuo
Favorite  |  View/Download:82/0  |  Submit date:2018/07/30
Superposition  Protein structure alignment  Iterative closest point  
Determining modular organization of protein interaction networks by maximizing modularity density 期刊论文
BMC SYSTEMS BIOLOGY, 2010, 卷号: 4, 页码: 12
Authors:  Zhang, Shihua;  Ning, Xue-Mei;  Ding, Chris;  Zhang, Xiang-Sun
Favorite  |  View/Download:81/0  |  Submit date:2018/07/30