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DeepDigest: Prediction of Protein Proteolytic Digestion with Deep Learning 期刊论文
ANALYTICAL CHEMISTRY, 2021, 卷号: 93, 期号: 15, 页码: 6094-6103
Authors:  Yang, Jinghan;  Gao, Zhiqiang;  Ren, Xiuhan;  Sheng, Jie;  Xu, Ping;  Chang, Cheng;  Fu, Yan
Favorite  |  View/Download:1/0  |  Submit date:2021/10/26
Unambiguous Phosphosite Localization through the Combination of Trypsin and LysargiNase Mirror Spectra in a Large-Scale Phosphoproteome Study 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2020, 卷号: 19, 期号: 6, 页码: 2185-2194
Authors:  Xu, Feng;  Yu, Li;  Peng, Xuehui;  Zhang, Junling;  Li, Suzhen;  Liu, Shu;  Yin, Yanan;  An, Zhiwu;  Wang, Fuqiang;  Fu, Yan;  Xu, Ping
Favorite  |  View/Download:30/0  |  Submit date:2020/09/23
trypsin  LysargiNase  combined spectra  ion coverage  phosphosite localization  PTMiner  
Transfer posterior error probability estimation for peptide identification 期刊论文
BMC Bioinformatics, 2020, 卷号: 21, 期号: 1
Authors:  Yi,Xinpei;  Gong,Fuzhou;  Fu,Yan
Favorite  |  View/Download:23/0  |  Submit date:2020/05/24
Proteomics  Mass spectrometry  Quality control  Posterior error probability  Local false discovery rate  Transfer learning  
Large-scale Identification of N-linked Intact Glycopeptides in Human Serum using HILIC Enrichment and Spectral Library Search 期刊论文
MOLECULAR & CELLULAR PROTEOMICS, 2020, 卷号: 19, 期号: 4, 页码: 672-689
Authors:  Shu, Qingbo;  Li, Mengjie;  Shu, Lian;  An, Zhiwu;  Wang, Jifeng;  Lv, Hao;  Yang, Ming;  Cai, Tanxi;  Hu, Tony;  Fu, Yan;  Yang, Fuquan
Favorite  |  View/Download:34/0  |  Submit date:2020/05/24
Prim-O-glucosylcimifugin enhances the antitumour effect of PD-1 inhibition by targeting myeloid-derived suppressor cells 期刊论文
JOURNAL FOR IMMUNOTHERAPY OF CANCER, 2019, 卷号: 7, 期号: 1, 页码: 15
Authors:  Gao, Wanfeng;  Zhang, Xiaoyun;  Yang, Wendong;  Dou, Daolei;  Zhang, Heng;  Tang, Yuanhao;  Zhong, Weilong;  Meng, Jing;  Bai, Yun;  Liu, Yanrong;  Yang, Lan;  Chen, Shuang;  Liu, Huijuan;  Yang, Cheng;  Sun, Tao
Favorite  |  View/Download:26/0  |  Submit date:2020/01/10
Prim-O-glucosylcimifugin  Myeloid-derived suppressor cells  Proliferation  Metabolism  PD-1 inhibitor  
AP3: An Advanced Proteotypic Peptide Predictor for Targeted Proteomics by Incorporating Peptide Digestibility 期刊论文
ANALYTICAL CHEMISTRY, 2019, 卷号: 91, 期号: 13, 页码: 8705-8711
Authors:  Gao, Zhiqiang;  Chang, Cheng;  Yang, Jinghan;  Zhu, Yunping;  Fu, Yan
Favorite  |  View/Download:51/0  |  Submit date:2020/01/10
PTMiner: Localization and Quality Control of Protein Modifications Detected in an Open Search and Its Application to Comprehensive Post-translational Modification Characterization in Human Proteome 期刊论文
MOLECULAR & CELLULAR PROTEOMICS, 2019, 卷号: 18, 期号: 2, 页码: 391-405
Authors:  An, Zhiwu;  Zhai, Linhui;  Ying, Wantao;  Qian, Xiaohong;  Gong, Fuzhou;  Tan, Minjia;  Fu, Yan
Favorite  |  View/Download:163/0  |  Submit date:2019/03/11
Quality control of single amino acid variations detected by tandem mass spectrometry 期刊论文
JOURNAL OF PROTEOMICS, 2018, 卷号: 187, 页码: 144-151
Authors:  Yi, Xinpei;  Wang, Bo;  An, Zhiwu;  Gong, Fuzhou;  Li, Jing;  Fu, Yan
Favorite  |  View/Download:114/0  |  Submit date:2018/11/16
Single amino acid variations  Mass spectrometry  Peptide identification  False discovery rate  Unrestrictive mass shift relocalization  
Prediction of subcellular location of apoptosis proteins by incorporating PsePSSM and DCCA coefficient based on LFDA dimensionality reduction 期刊论文
BMC Genomics, 2018, 卷号: 19, 期号: 1
Authors:  Yu,Bin;  Li,Shan;  Qiu,Wenying;  Wang,Minghui;  Du,Junwei;  Zhang,Yusen;  Chen,Xing
Favorite  |  View/Download:35/0  |  Submit date:2018/07/30
Apoptosis proteins  Subcellular localization  Pseudo-position specific scoring matrix  Detrended cross-correlation analysis coefficient  Local fisher discriminant analysis  Support vector machine  
Quality control of single amino acid variations detected by tandem mass spectrometry 期刊论文
JOURNAL OF PROTEOMICS, 2018, 卷号: 187, 页码: 144
Authors:  Yi, Xinpei;  Wang, Bo;  An, Zhiwu;  Gong, Fuzhou;  Li, Jing;  Fu, Yan
Favorite  |  View/Download:37/0  |  Submit date:2019/12/31