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Null-free False Discovery Rate Control Using Decoy Permutations 期刊论文
ACTA MATHEMATICAE APPLICATAE SINICA-ENGLISH SERIES, 2022, 卷号: 38, 期号: 2, 页码: 235-253
Authors:  He, Kun;  Li, Meng-jie;  Fu, Yan;  Gong, Fu-zhou;  Sun, Xiao-ming
Favorite  |  View/Download:35/0  |  Submit date:2022/06/21
multiple testing  false discovery rate  null distribution-free  p-value-free  decoy permutations  knockoff filter  
Approximate distance correlation for selecting highly interrelated genes across datasets 期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2021, 卷号: 17, 期号: 11, 页码: 18
Authors:  Shen, Qunlun;  Zhang, Shihua
Favorite  |  View/Download:36/0  |  Submit date:2022/04/02
Transfer posterior error probability estimation for peptide identification 期刊论文
BMC Bioinformatics, 2020, 卷号: 21, 期号: 1
Authors:  Yi,Xinpei;  Gong,Fuzhou;  Fu,Yan
Favorite  |  View/Download:66/0  |  Submit date:2020/05/24
Proteomics  Mass spectrometry  Quality control  Posterior error probability  Local false discovery rate  Transfer learning  
Large-scale Identification of N-linked Intact Glycopeptides in Human Serum using HILIC Enrichment and Spectral Library Search 期刊论文
MOLECULAR & CELLULAR PROTEOMICS, 2020, 卷号: 19, 期号: 4, 页码: 672-689
Authors:  Shu, Qingbo;  Li, Mengjie;  Shu, Lian;  An, Zhiwu;  Wang, Jifeng;  Lv, Hao;  Yang, Ming;  Cai, Tanxi;  Hu, Tony;  Fu, Yan;  Yang, Fuquan
Favorite  |  View/Download:92/0  |  Submit date:2020/05/24
PTMiner: Localization and Quality Control of Protein Modifications Detected in an Open Search and Its Application to Comprehensive Post-translational Modification Characterization in Human Proteome 期刊论文
MOLECULAR & CELLULAR PROTEOMICS, 2019, 卷号: 18, 期号: 2, 页码: 391-405
Authors:  An, Zhiwu;  Zhai, Linhui;  Ying, Wantao;  Qian, Xiaohong;  Gong, Fuzhou;  Tan, Minjia;  Fu, Yan
Favorite  |  View/Download:249/0  |  Submit date:2019/03/11
Quality control of single amino acid variations detected by tandem mass spectrometry 期刊论文
JOURNAL OF PROTEOMICS, 2018, 卷号: 187, 页码: 144-151
Authors:  Yi, Xinpei;  Wang, Bo;  An, Zhiwu;  Gong, Fuzhou;  Li, Jing;  Fu, Yan
Favorite  |  View/Download:176/0  |  Submit date:2018/11/16
Single amino acid variations  Mass spectrometry  Peptide identification  False discovery rate  Unrestrictive mass shift relocalization  
N-Linked Glycopeptide Identification Based on Open Mass Spectral Library Search 期刊论文
BIOMED RESEARCH INTERNATIONAL, 2018, 页码: 11
Authors:  An, Zhiwu;  Shu, Qingbo;  Lv, Hao;  Shu, Lian;  Wang, Jifeng;  Yang, Fuquan;  Fu, Yan
Favorite  |  View/Download:109/0  |  Submit date:2018/10/07
A note on the false discovery rate of novel peptides in proteogenomics 期刊论文
BIOINFORMATICS, 2015, 卷号: 31, 期号: 20, 页码: 3249-3253
Authors:  Zhang, Kun;  Fu, Yan;  Zeng, Wen-Feng;  He, Kun;  Chi, Hao;  Liu, Chao;  Li, Yan-Chang;  Gao, Yuan;  Xu, Ping;  He, Si-Min
Favorite  |  View/Download:103/0  |  Submit date:2018/07/30
Kernel-based data fusion improves the drug-protein interaction prediction 期刊论文
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2011, 卷号: 35, 期号: 6, 页码: 353-362
Authors:  Wang, Yong-Cui;  Zhang, Chun-Hua;  Deng, Nai-Yang;  Wang, Yong
Favorite  |  View/Download:74/0  |  Submit date:2018/07/30
Drug-target interaction  Chemical space  Pharmacological space  Therapeutic space  Genomic space  Kernel function  Support vector machine  
Computationally Probing Drug-Protein Interactions Via Support Vector Machine 期刊论文
LETTERS IN DRUG DESIGN & DISCOVERY, 2010, 卷号: 7, 期号: 5, 页码: 370-378
Authors:  Wang, Yong-Cui;  Yang, Zhi-Xia;  Wang, Yong;  Deng, Nai-Yang
Favorite  |  View/Download:68/0  |  Submit date:2018/07/30
Drug-target interaction  Chemical structure  Protein sequence  Imbalance problem  Support vector machine