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On the characterization of Brownian bridge measure on the pinned path space over a compact Riemannian manifold 期刊论文
BERNOULLI, 2022, 卷号: 28, 期号: 4, 页码: 2322-2344
Authors:  Gong, Fuzhou;  Sun, Xiaoxia
Favorite  |  View/Download：19/0  |  Submit date：2023/02/07
Brownian bridge  pull back formula  integration by parts formula  characterization  
BiTSC2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 12
Authors:  Chen, Ziwei;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
Favorite  |  View/Download：86/0  |  Submit date：2022/06/21
single-cell DNA sequencing  intra-tumor heterogeneity  single nucleotide variation  copy number alteration  Bayesian modeling  cancer evolution  
Null-free False Discovery Rate Control Using Decoy Permutations 期刊论文
ACTA MATHEMATICAE APPLICATAE SINICA-ENGLISH SERIES, 2022, 卷号: 38, 期号: 2, 页码: 235-253
Authors:  He, Kun;  Li, Meng-jie;  Fu, Yan;  Gong, Fu-zhou;  Sun, Xiao-ming
Favorite  |  View/Download：77/0  |  Submit date：2022/06/21
multiple testing  false discovery rate  null distribution-free  p-value-free  decoy permutations  knockoff filter  
NeuralEE: A GPU-Accelerated Elastic Embedding Dimensionality Reduction Method for Visualizing Large-Scale scRNA-Seq Data 期刊论文
FRONTIERS IN GENETICS, 2020, 卷号: 11, 页码: 8
Authors:  Xiong, Jiankang;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
Favorite  |  View/Download：118/0  |  Submit date：2021/01/14
single-cell RNA sequencing  elastic embedding  neural networks  large-scale  stochastic optimization  parametric models  generalizable models  
RobustClone: a robust PCA method for tumor clone and evolution inference from single-cell sequencing data 期刊论文
BIOINFORMATICS, 2020, 卷号: 36, 期号: 11, 页码: 3299-3306
Authors:  Chen, Ziwei;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
Favorite  |  View/Download：140/0  |  Submit date：2020/09/23
Transfer posterior error probability estimation for peptide identification 期刊论文
BMC Bioinformatics, 2020, 卷号: 21, 期号: 1
Authors:  Yi,Xinpei;  Gong,Fuzhou;  Fu,Yan
Favorite  |  View/Download：113/0  |  Submit date：2020/05/24
Proteomics  Mass spectrometry  Quality control  Posterior error probability  Local false discovery rate  Transfer learning  
Clustering phase of a general constraint satisfaction problem model d-k-CSP 期刊论文
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2020, 卷号: 537, 页码: 15
Authors:  Xu, Wei;  Gong, Fuzhou;  Zhou, Guangyan
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Constraint satisfaction problem  Solution space structure  Clustering phase transition  Problem hardness  Belief propagation  
Multi-scale analysis of schizophrenia risk genes, brain structure, and clinical symptoms reveals integrative clues for subtyping schizophrenia patients 期刊论文
JOURNAL OF MOLECULAR CELL BIOLOGY, 2019, 卷号: 11, 期号: 8, 页码: 678-687
Authors:  Ma, Liang;  Rolls, Edmund T.;  Liu, Xiuqin;  Liu, Yuting;  Jiao, Zeyu;  Wang, Yue;  Gong, Weikang;  Ma, Zhiming;  Gong, Fuzhou;  Wan, Lin
Favorite  |  View/Download：159/0  |  Submit date：2020/05/24
Schizophrenia  PANSS  multi-scale analysis  hot cluster  grey matter volume  pathway  
DensityPath: an algorithm to visualize and reconstruct cell state-transition path on density landscape for single-cell RNA sequencing data 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 15, 页码: 2593-2601
Authors:  Chen, Ziwei;  An, Shaokun;  Bai, Xiangqi;  Gong, Fuzhou;  Ma, Liang;  Wan, Lin
Favorite  |  View/Download：147/0  |  Submit date：2020/01/10
PTMiner: Localization and Quality Control of Protein Modifications Detected in an Open Search and Its Application to Comprehensive Post-translational Modification Characterization in Human Proteome 期刊论文
MOLECULAR & CELLULAR PROTEOMICS, 2019, 卷号: 18, 期号: 2, 页码: 391-405
Authors:  An, Zhiwu;  Zhai, Linhui;  Ying, Wantao;  Qian, Xiaohong;  Gong, Fuzhou;  Tan, Minjia;  Fu, Yan
Favorite  |  View/Download：330/0  |  Submit date：2019/03/11