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What makes for uniformity for non-contrastive self-supervised learning? 期刊论文
SCIENCE CHINA-TECHNOLOGICAL SCIENCES, 2022, 页码: 10
作者:  Wang YinQuan;  Zhang XiaoPeng;  Tian Qi;  Lu JinHu
收藏  |  浏览/下载：98/0  |  提交时间：2023/02/07
contrastive learning  self-supervised learning  representation  uniformity  dynamics  
A simulation study to examine the impact of recombination on phylogenomic inferences under the multispecies coalescent model 期刊论文
MOLECULAR ECOLOGY, 2022, 页码: 16
作者:  Zhu, Tianqi;  Flouri, Tomas;  Yang, Ziheng
收藏  |  浏览/下载：151/0  |  提交时间：2022/04/29
BPP  introgression  MSci  multispecies coalescent  recombination  species delimitation  species tree  
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022 期刊论文
NUCLEIC ACIDS RESEARCH, 2022, 卷号: 50, 期号: D1, 页码: D27-D38
作者:  Xue, Yongbiao;  Bao, Yiming;  Zhang Zhang;  Zhao, Wenming;  Xiao, Jingfa;  He, Shun-min;  Zhang, Guoqing;  Li, Yixue;  Guoping, Zhao;  Chen, Runsheng;  Zeng, Jingyao;  Zhang, Yadong;  Shang, Yun-fei;  Mai, Jialin;  Shi, Shuo;  Lu, Mingming;  Bu, Congfan;  Zhang, Zhewen;  Du, Zhenglin;  Wang, Yinying;  Kang, Hongen;  Xu, Tianyi;  Hao, Lili;  Jia, Peilin;  Jiang, Shuai;  Qian, Qiheng;  Zhu, Tong-tong;  Shang, Yunfei;  Zong, Wenting;  Jin, Tong;  Zhang, Yuansheng;  Zou, Dong;  Zhang, Zhang;  Du, Qiang;  Feng, Changrui;  Ma, Lina;  Zhang, Sisi;  Wang, Anke;  Dong, Lili;  Wang, Yan-qing;  Liu, Wan;  Yan, Xing;  Ling, Yunchao;  Zhao, Guoping;  Zhou, Zhihua;  Kang, Wang;  Zhang, Tao;  Ma, Shuai;  Yan, Haoteng;  Liu, Zunpeng;  Ji, Zejun;  Cai, Yusheng;  Wang, Si;  Song, Moshi;  Ren, Jie;  Zhou, Qi;  Qu, Jing;  Zhang, Weiqi;  Liu, Guanghui;  Chen, Xu;  Chen, Tingting;  Sisi, Zhang;  Sun, Yanling;  Yu, Caixia;  Tang, Bixia;  Zhu, Junwei;  Zhai, Shuang;  Sun, Yubin;  Chen, Qiancheng;  Yang, Xiaoyu;  Zhang, Xin;  Sang, Zhengqi;  Wang, Yonggang;  Zhao, Yilin;  Chen, Huanxin;  Lan, Li;  Wang, Yanqing;  Ma, Yingke;  Jia, Yaokai;  Zheng, Xin-chang;  Chen, Meili;  Dong, Zou;  Zhu, Tongtong;  Ming, Chen;  Niu, Guangyi;  Pan, Rong;  Jing, Wei;  Sang, Jian;  Liu, Chang;  Xiong, Yujia;  Lili, Hao;  Zhang, Mochen;  Wang, Guoliang;  Yi, Lizhi;  Wei, Zhao;  Zong, Wenting;  Wu, Song;  Xiong, Zhuang;  Rujiao, Li;  Zheng, Gong;  Li, Rujiao;  Liu, Lin;  Li, Zhao;  Li, Qianpeng;  Wei, Jing;  Luo, Sicheng;  Wang, Jiajia;  Shi, Yirong;  Zhou, Honghong;  Zhang, Peng;  Song, Tingrui;  Li, Yanyan;  Yang, Fei;  Li, Mengwei;  Li, Zhao-hua;  Kang, Hongen;  Zheng, Xinchang;  Li, Ru-jiao;  Tian, Dongmei;  Liu, Xiaonan;  Li, Cuiping;  Teng, Xufei;  Song, Shuhui;  Zhang, Yang;  Niu, Guangyi;  Zhu, Tongtong;  Zhang, Yuansheng;  Chen, Ruru;  Zhang, Rongqin;  Xu, Feng;  Wang, Yifan;  Ling, Yunchao;  Zhou, Chenfen;  Wang, Haizhou;  Teschendorff, Andrew E.;  He, Yungang;  Zhen, Yang;  Li, Cuiping;  Zhu, Junwei;  Li, Lun;  Li, Na;  Gong, Zheng;  Chen, Meili;  Ying Cui;  Duan, Guangya;  Tong, Jin;  Wu, Gangao;  Huang, Tianhao;  Jin, Enhui;  Zhao, Wei;  Kang, Hailong;  Wang, Zhonghuang;  Zeng, Jingyao;  Chen, Hua;  Li, Mingkun;  Zhao, Wenming;  Ning, Wanshan;  Xue, Yu;  Liu, Yanhu;  Cui, Ying;  Zhou, Qijun;  Liu, Xingyan;  Zhang, Longlong;  Mao, Bingyu;  Zhang, Shihua;  Zhang, Yaping;  Wang, Guodong;  Zhu, Qianghui;  Li, Xin;  Li, Menghua;  Liu, Yuanming;  Luo, Hong;  Wu, Xiaoyuan;  Jing, Haichun;  Pan, Yitong;  Chen, Ming;  Ma, Lina;  Shi, Leisheng;  Li, Mingkun;  Lan, Li;  Bao, Yiming;  Zhao, Wen-ming;  Zuo, Zhixiang;  Ren, Jian;  Zhang, Xinxin;  Xiao, Yun;  Li, Xia;  Liu, Dan;  Zhang, Chi;  Xue, Yu;  Zhao, Zheng;  Jiang, Tao;  Wu, Wanying;  Zhao, Fangqing;  Meng, Xianwen;  Peng, Di;  Luo, Hao;  Gao, Feng;  Lin, Shaofeng;  Liu, Chuijie;  Guo, Anyuan;  Yuan, Hao;  Su, Tianhan;  Zhang, Yong E.;  Zhou, Yincong;  Zhang, Weizhi;  Fu, Shanshan;  Tan, Xiaodan;  Xie, Yubin;  Guo, Guoji;  Wang, Chenwei;  Liao, Xingyu;  Gao, Xin;  Wang, Jianxin;  Xie, Guiyan;  Yuan, Chunhui;  Tian, Feng;  Yang, Dechang;  Tang, Dachao;  Wu, Wenyi;  Gou, Yujie;  Han, Cheng;  Cui, Qinghua;  Li, Xiang Shang;  Li, Chuan-Yun;  Luo, XiaoTong;  Ren, Jia;  Li, Xia
收藏  |  浏览/下载：698/0  |  提交时间：2022/04/02
Complexity of the simplest species tree problem 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2021, 卷号: 38, 期号: 9, 页码: 3993-4009
作者:  Zhu, Tianqi;  Yang, Ziheng
收藏  |  浏览/下载：157/0  |  提交时间：2022/04/02
concatenation  efficiency  molecular clock  MSC  multispecies coalescent  species tree  
The Asymptotic Behavior of Bootstrap Support Values in Molecular Phylogenetics 期刊论文
SYSTEMATIC BIOLOGY, 2021, 卷号: 70, 期号: 4, 页码: 774-785
作者:  Huang, Jun;  Liu, Yuting;  Zhu, Tianqi;  Yang, Ziheng
收藏  |  浏览/下载：176/0  |  提交时间：2021/10/26
Bootstrap  model selection  star-tree paradox  support value  
Genetic Load and Potential Mutational Meltdown in Cancer Cell Populations 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2019, 卷号: 36, 期号: 3, 页码: 541-552
作者:  Zhang, Yuezheng;  Li, Yawei;  Li, Tao;  Shen, Xu;  Zhu, Tianqi;  Tao, Yong;  Li, Xueying;  Wang, Di;  Ma, Qin;  Hu, Zheng;  Liu, Jialin;  Ruan, Jue;  Cai, Jun;  Wang, Hurng-Yi;  Lu, Xuemei
收藏  |  浏览/下载：306/0  |  提交时间：2020/01/10
genetic load  Muller's ratchet  HeLa cell line  copy number variation  
The Spectre of Too Many Species 期刊论文
SYSTEMATIC BIOLOGY, 2019, 卷号: 68, 期号: 1, 页码: 168-181
作者:  Leache, Adam D.;  Zhu, Tianqi;  Rannala, Bruce;  Yang, Ziheng
收藏  |  浏览/下载：232/0  |  提交时间：2020/01/10
bpp  multispecies coalescent  Species delimitation  taxonomy  
使用基因组数据进行贝叶斯物种分化时间估计 期刊论文
中国科学生命科学, 2019, 卷号: 000, 期号: 004, 页码: 472
作者:  朱天琪
收藏  |  浏览/下载：201/0  |  提交时间：2020/01/10
Prevalence of cryptic species in morphologically uniform taxa - Fast speciation and evolutionary radiation in Asian frogs 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2018, 卷号: 127, 页码: 723-731
作者:  Liu, Zuyao;  Chen, Guoling;  Zhu, Tianqi;  Zeng, Zhaochi;  Lyu, Zhitong;  Wang, Jian;  Messenger, Kevin;  Greenberg, Anthony;  Guo, Zixiao;  Yang, Ziheng;  Shi, Suhua;  Wang, Yingyong
收藏  |  浏览/下载：243/0  |  提交时间：2019/01/11
Cryptic species  Delimitation  Diversity  Megophrys  Phylogeography  
Ultrasensitive and high-efficiency screen of de novo low-frequency mutations by o2n-seq 期刊论文
NATURE COMMUNICATIONS, 2017, 卷号: 8, 页码: 11
作者:  Wang, Kaile;  Lai, Shujuan;  Yang, Xiaoxu;  Zhu, Tianqi;  Lu, Xuemei;  Wu, Chung-I;  Ruan, Jue
收藏  |  浏览/下载：178/0  |  提交时间：2018/07/30