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BiTSC2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 12
Authors:  Chen, Ziwei;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
Favorite  |  View/Download：86/0  |  Submit date：2022/06/21
single-cell DNA sequencing  intra-tumor heterogeneity  single nucleotide variation  copy number alteration  Bayesian modeling  cancer evolution  
RobustClone: a robust PCA method for tumor clone and evolution inference from single-cell sequencing data 期刊论文
BIOINFORMATICS, 2020, 卷号: 36, 期号: 11, 页码: 3299-3306
Authors:  Chen, Ziwei;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang
Favorite  |  View/Download：140/0  |  Submit date：2020/09/23
Genetic Load and Potential Mutational Meltdown in Cancer Cell Populations 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2019, 卷号: 36, 期号: 3, 页码: 541-552
Authors:  Zhang, Yuezheng;  Li, Yawei;  Li, Tao;  Shen, Xu;  Zhu, Tianqi;  Tao, Yong;  Li, Xueying;  Wang, Di;  Ma, Qin;  Hu, Zheng;  Liu, Jialin;  Ruan, Jue;  Cai, Jun;  Wang, Hurng-Yi;  Lu, Xuemei
Favorite  |  View/Download：181/0  |  Submit date：2020/01/10
genetic load  Muller's ratchet  HeLa cell line  copy number variation  
Matrix Integrative Analysis (MIA) of Multiple Genomic Data for Modular Patterns 期刊论文
FRONTIERS IN GENETICS, 2018, 卷号: 9, 页码: 12
Authors:  Chen, Jinyu;  Zhang, Shihua
Favorite  |  View/Download：141/0  |  Submit date：2018/07/30
bioinformatics  multi-dimensional genomics  matrix integrative analysis  data integration  module discovery  non-negative matrix factorization (NMF)  partial least squares (PLS)  
A remark on copy number variation detection methods 期刊论文
PLOS ONE, 2018, 卷号: 13, 期号: 4, 页码: 11
Authors:  Li, Shuo;  Dou, Xialiang;  Gao, Ruiqi;  Ge, Xinzhou;  Qian, Minping;  Wan, Lin
Favorite  |  View/Download：105/0  |  Submit date：2018/07/30
Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data 期刊论文
BMC Systems Biology, 2013, 卷号: 7, 期号: Suppl 2
Authors:  Zhang,Junhua;  Zhang,Shihua;  Wang,Yong;  Zhang,Xiang-Sun
Favorite  |  View/Download：111/0  |  Submit date：2018/07/30
A new algorithm for computing the minimum Hausdorff distance between two point sets on aline under translation 期刊论文
INFORMATION PROCESSING LETTERS, 2008, 卷号: 106, 期号: 2, 页码: 52-58
Authors:  Li, Banghe;  Shen, Yuefeng;  Li, Bo
View  |  Adobe PDF(442Kb)  |  Favorite  |  View/Download：312/87  |  Submit date：2018/07/30
Hausdorff Distance  Pattern Recognition  Computational Geometry