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Network diffusion for scalable embedding of massive single-cell ATAC-seq data 期刊论文
SCIENCE BULLETIN, 2021, 卷号: 66, 期号: 22, 页码: 2271-2276
作者:  Dong, Kangning;  Zhang, Shihua
收藏  |  浏览/下载:121/0  |  提交时间:2022/04/02
Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data 期刊论文
NATURE BIOTECHNOLOGY, 2021, 页码: 18
作者:  Sun, Duanchen;  Guan, Xiangnan;  Moran, Amy E.;  Wu, Ling-Yun;  Qian, David Z.;  Schedin, Pepper;  Dai, Mu-Shui;  Danilov, Alexey, V;  Alumkal, Joshi J.;  Adey, Andrew C.;  Spellman, Paul T.;  Xia, Zheng
收藏  |  浏览/下载:158/0  |  提交时间:2022/04/02
MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 6, 页码: 14
作者:  Zou, Meng;  Duren, Zhana;  Yuan, Qiuyue;  Li, Henry;  Hutchins, Andrew Paul;  Wong, Wing Hung;  Wang, Yong
收藏  |  浏览/下载:159/0  |  提交时间:2022/04/02
cell type-specific marker  TFs  surface markers  dimension reduction  hierarchical topology  
Approximate distance correlation for selecting highly interrelated genes across datasets 期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2021, 卷号: 17, 期号: 11, 页码: 18
作者:  Shen, Qunlun;  Zhang, Shihua
收藏  |  浏览/下载:122/0  |  提交时间:2022/04/02
MUREN: a robust and multi-reference approach of RNA-seq transcript normalization 期刊论文
BMC Bioinformatics, 2021, 卷号: 22, 期号: 1
作者:  Feng,Yance;  Li,Lei M.
收藏  |  浏览/下载:137/0  |  提交时间:2021/10/26
RNA-seq  Normalization  Asymmetrically regulated transcription profiles (ART)  Skewness  Mode  Multi-reference  
A Hybrid Targeted Eno-Thinc Scheme With a Modified BVD Algorithm and its Application in Stiff Detonation 期刊论文
INTERNATIONAL JOURNAL OF COMPUTATIONAL FLUID DYNAMICS, 2021, 页码: 20
作者:  Hou, Zongfu;  Zhao, Kunlei
收藏  |  浏览/下载:134/0  |  提交时间:2021/10/26
Boundary variation diminishing  central-upwind WENO  THINC  reconstruction  Godunov-type method  detonation  
OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions 期刊论文
NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: W1, 页码: W483-W490
作者:  Chen, Shengquan;  Liu, Qiao;  Cui, Xuejian;  Feng, Zhanying;  Li, Chunquan;  Wang, Xiaowo;  Zhang, Xuegong;  Wang, Yong;  Jiang, Rui
收藏  |  浏览/下载:145/0  |  提交时间:2021/10/26
Joint reconstruction of cis-regulatory interaction networks across multiple tissues using single-cell chromatin accessibility data 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 3, 页码: 15
作者:  Dong, Kangning;  Zhang, Shihua
收藏  |  浏览/下载:121/0  |  提交时间:2022/04/02
cis-regulatory interaction networks  single-cell ATAC-seq  Gaussian graphical LASSO  
Max-Min Fairness in IRS-Aided Multi-Cell MISO Systems With Joint Transmit and Reflective Beamforming 期刊论文
IEEE TRANSACTIONS ON WIRELESS COMMUNICATIONS, 2021, 卷号: 20, 期号: 2, 页码: 1379-1393
作者:  Xie, Hailiang;  Xu, Jie;  Liu, Ya-Feng
收藏  |  浏览/下载:200/0  |  提交时间:2021/04/26
Array signal processing  MISO communication  Optimization  Wireless communication  Signal to noise ratio  Interference  Computational complexity  Intelligent reflecting surface (IRS)  multi-cell systems  multiple-input single-output (MISO)  coordinated transmit beamforming  reflective beamforming  optimization  
A kernel non-negative matrix factorization framework for single cell clustering 期刊论文
APPLIED MATHEMATICAL MODELLING, 2021, 卷号: 90, 页码: 875-888
作者:  Jiang, Hao;  Yi, Ming;  Zhang, Shihua
收藏  |  浏览/下载:130/0  |  提交时间:2021/04/26
Single cell RNA-sequencing  Kernel non-negative matrix factorization  Cellular heterogeneity