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hDirect-MAP: projection-free single-cell modeling of response to checkpoint immunotherapy 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 2, 页码: 16
作者:  Lu, Yong;  Xue, Gang;  Zheng, Ningbo;  Han, Kun;  Yang, Wenzhong;  Wang, Rui-Sheng;  Wu, Lingyun;  Miller, Lance D.;  Pardee, Timothy;  Triozzi, Pierre L.;  Lo, Hui-Wen;  Watabe, Kounosuke;  Wong, Stephen T. C.;  Pasche, Boris C.;  Zhang, Wei;  Jin, Guangxu
收藏  |  浏览/下载：132/0  |  提交时间：2023/02/07
single-cell RNA sequencing (scRNA-seq)  single-cell mass cytometry (CyTOF)  Pareto optimization  projection-free single-cell modeling  response to immune checkpoint blockade  
Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 13
作者:  Liu, Zhi-Ping;  Liu, Shutang;  Chen, Ruitang;  Huang, Xiaopeng;  Wu, Ling-Yun
收藏  |  浏览/下载：157/0  |  提交时间：2018/07/30
RNA-binding pocket  Local structure classification  Structural alignment  Network clustering  Structure motif  
Discovery of co-occurring driver pathways in cancer 期刊论文
BMC Bioinformatics, 2014, 卷号: 15, 期号: 1
作者:  Zhang,Junhua;  Wu,Ling-Yun;  Zhang,Xiang-Sun;  Zhang,Shihua
收藏  |  浏览/下载：140/0  |  提交时间：2018/07/30
An efficient network querying method based on conditional random fields 期刊论文
BIOINFORMATICS, 2011, 卷号: 27, 期号: 22, 页码: 3173-3178
作者:  Huang, Qiang;  Wu, Ling-Yun;  Zhang, Xiang-Sun
收藏  |  浏览/下载：129/0  |  提交时间：2018/07/30
Analysis on multi-domain cooperation for predicting protein-protein interactions 期刊论文
BMC BIOINFORMATICS, 2007, 卷号: 8, 页码: 20
作者:  Wang, Rui-Sheng;  Wang, Yong;  Wu, Ling-Yun;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：142/0  |  提交时间：2018/07/30
Capacitated facility location problem with general setup cost 期刊论文
COMPUTERS & OPERATIONS RESEARCH, 2006, 卷号: 33, 期号: 5, 页码: 1226-1241
作者:  Wu, LY;  Zhang, XS;  Zhang, JL
收藏  |  浏览/下载：125/0  |  提交时间：2018/07/30
facility location problem  Lagrangian heuristic  mixed integer programming  
Haplotype assembly from aligned weighted SNP fragments 期刊论文
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2005, 卷号: 29, 期号: 4, 页码: 281-287
作者:  Zhao, YY;  Wu, LY;  Zhang, JH;  Wang, RS;  Zhang, XS
收藏  |  浏览/下载：104/0  |  提交时间：2018/07/30
SNP  haplotype  assembly  minimum letter flips  dynamic clustering