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Frontiers in biomolecular mesh generation and molecular visualization systems 期刊论文
Visual Computing for Industry, Biomedicine, and Art, 2018, 卷号: 1, 期号: 1
作者:  Gui,Sheng;  Khan,Dawar;  Wang,Qin;  Yan,Dong-Ming;  Lu,Ben-Zhuo
收藏  |  浏览/下载:172/0  |  提交时间:2018/10/07
Biomolecular mesh generation  Remeshing  BEM  FEM  Molecular visualization  
Molecular Surface Remeshing with Local Region Refinement 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2018, 卷号: 19, 期号: 5, 页码: 20
作者:  Khan, Dawar;  Yan, Dong-Ming;  Gui, Sheng;  Lu, Benzhuo;  Zhang, Xiaopeng
收藏  |  浏览/下载:203/0  |  提交时间:2018/07/30
molecular surface mesh  molecular simulation  meshing quality  finite element method  
EFFICIENT AND QUALIFIED MESH GENERATION FOR GAUSSIAN MOLECULAR SURFACE USING ADAPTIVE PARTITION AND PIECEWISE POLYNOMIAL APPROXIMATION 期刊论文
SIAM JOURNAL ON SCIENTIFIC COMPUTING, 2018, 卷号: 40, 期号: 2, 页码: B507-B527
作者:  Liu, Tiantian;  Chen, Minxin;  Lu, Benzhuo
收藏  |  浏览/下载:169/0  |  提交时间:2018/07/30
surface mesh generation  Gaussian surface  triangulation  adaptive partition  trilinear polynomial  
Quality improvement of surface triangular mesh using a modified Laplacian smoothing approach avoiding intersection 期刊论文
PLOS ONE, 2017, 卷号: 12, 期号: 9, 页码: 16
作者:  Liu, Tiantian;  Chen, Minxin;  Song, Yu;  Li, Hongliang;  Lu, Benzhuo
收藏  |  浏览/下载:119/0  |  提交时间:2018/07/30
Automated Parallel and Body-Fitted Mesh Generation in Finite Element Simulation of Macromolecular Systems 期刊论文
COMMUNICATIONS IN COMPUTATIONAL PHYSICS, 2016, 卷号: 19, 期号: 3, 页码: 582-602
作者:  Xie, Yan;  Liu, Tiantian;  Tu, Bin;  Lu, Benzhuo;  Zhang, Linbo
收藏  |  浏览/下载:120/0  |  提交时间:2018/07/30
Parallel mesh generation  body-fitted  PHG  biomolecules  finite element simulation  
Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes I: Finite element solutions 期刊论文
JOURNAL OF COMPUTATIONAL PHYSICS, 2010, 卷号: 229, 期号: 19, 页码: 6979-6994
作者:  Lu, Benzhuo;  Holst, Michael J.;  McCammon, J. Andrew;  Zhou, Y. C.
收藏  |  浏览/下载:146/0  |  提交时间:2018/07/30
Electrodiffusion  Poisson-Nernst-Planck equations  Finite element  Singular charges  Molecular surface  Boundary condition  Conditioning  
Surface smoothing and quality improvement of quadrilateral/hexahedral meshes with geometric flow 期刊论文
COMMUNICATIONS IN NUMERICAL METHODS IN ENGINEERING, 2009, 卷号: 25, 期号: 1, 页码: 1-18
作者:  Zhang, Yongjie;  Bajaj, Chandrajit;  Xu, Guoliang
收藏  |  浏览/下载:124/0  |  提交时间:2018/07/30
quadrilateral/hexahedral mesh  surface smoothing  feature preservation  quality improvement  geometric flow  
Higher-Order Level-Set Method and Its Application in Biomolecular Surfaces Construction 期刊论文
JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY, 2008, 卷号: 23, 期号: 6, 页码: 1026-1036
作者:  Bajaj, Chandrajit L.;  Xu, Guo-Liang;  Zhang, Qin
收藏  |  浏览/下载:106/0  |  提交时间:2018/07/30
higher-order spline level-set  geometric partial differential equation  biomolecular surface  
Quality meshing of implicit solvation models of biomolecular structures 期刊论文
COMPUTER AIDED GEOMETRIC DESIGN, 2006, 卷号: 23, 期号: 6, 页码: 510-530
作者:  Zhang, Yongjie;  Xu, Guoliang;  Bajaj, Chandrajit
收藏  |  浏览/下载:111/0  |  提交时间:2018/07/30
quality mesh  biomolecule  implicit solvation model  finite element simulation