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Molecular Sparse Representation by a 3D Ellipsoid Radial Basis Function Neural Network via L1 Regularization 期刊论文
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2020, 卷号: 60, 期号: 12, 页码: 6054-6064
Authors:  Gui, Sheng;  Chen, Zhaodi;  Lu, Benzhuo;  Chen, Minxin
Favorite  |  View/Download:49/0  |  Submit date:2021/04/26
Conic shapes have higher sensitivity than cylindrical ones in nanopore DNA sequencing 期刊论文
SCIENTIFIC REPORTS, 2018, 卷号: 8, 页码: 11
Authors:  Tu, Bin;  Bai, Shiyang;  Lu, Benzhuo;  Fang, Qiaojun
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Automated Parallel and Body-Fitted Mesh Generation in Finite Element Simulation of Macromolecular Systems 期刊论文
COMMUNICATIONS IN COMPUTATIONAL PHYSICS, 2016, 卷号: 19, 期号: 3, 页码: 582-602
Authors:  Xie, Yan;  Liu, Tiantian;  Tu, Bin;  Lu, Benzhuo;  Zhang, Linbo
Favorite  |  View/Download:41/0  |  Submit date:2018/07/30
Parallel mesh generation  body-fitted  PHG  biomolecules  finite element simulation  
TMSmesh: A Robust Method for Molecular Surface Mesh Generation Using a Trace Technique 期刊论文
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2011, 卷号: 7, 期号: 1, 页码: 203-212
Authors:  Chen, Minxin;  Lu, Benzhuo
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Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes I: Finite element solutions 期刊论文
JOURNAL OF COMPUTATIONAL PHYSICS, 2010, 卷号: 229, 期号: 19, 页码: 6979-6994
Authors:  Lu, Benzhuo;  Holst, Michael J.;  McCammon, J. Andrew;  Zhou, Y. C.
Favorite  |  View/Download:47/0  |  Submit date:2018/07/30
Electrodiffusion  Poisson-Nernst-Planck equations  Finite element  Singular charges  Molecular surface  Boundary condition  Conditioning  
Image Charge Methods for a Three-Dielectric-Layer Hybrid Solvation Model of Biomolecules 期刊论文
COMMUNICATIONS IN COMPUTATIONAL PHYSICS, 2009, 卷号: 6, 期号: 5, 页码: 955-977
Authors:  Qin, Peihua;  Xu, Zhenli;  Cai, Wei;  Jacobs, Donald
Favorite  |  View/Download:49/0  |  Submit date:2018/07/30
Image charge methods  distance-dependent dielectric permittivity  hybrid implicit/explicit model  reaction field  Poisson-Boltzmann equation  protein  
Quality meshing of implicit solvation models of biomolecular structures 期刊论文
COMPUTER AIDED GEOMETRIC DESIGN, 2006, 卷号: 23, 期号: 6, 页码: 510-530
Authors:  Zhang, Yongjie;  Xu, Guoliang;  Bajaj, Chandrajit
Favorite  |  View/Download:50/0  |  Submit date:2018/07/30
quality mesh  biomolecule  implicit solvation model  finite element simulation