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中国科学院数学与系统科学研究院机构知识库
KMS Of Academy of mathematics and systems sciences, CAS
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Molecular Sparse Representation by a 3D Ellipsoid Radial Basis Function Neural Network via L1 Regularization
期刊论文
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2020, 卷号: 60, 期号: 12, 页码: 6054-6064
Authors:
Gui, Sheng
;
Chen, Zhaodi
;
Lu, Benzhuo
;
Chen, Minxin
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View/Download:97/0
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Submit date:2021/04/26
Conic shapes have higher sensitivity than cylindrical ones in nanopore DNA sequencing
期刊论文
SCIENTIFIC REPORTS, 2018, 卷号: 8, 页码: 11
Authors:
Tu, Bin
;
Bai, Shiyang
;
Lu, Benzhuo
;
Fang, Qiaojun
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View/Download:125/0
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Submit date:2018/07/30
Automated Parallel and Body-Fitted Mesh Generation in Finite Element Simulation of Macromolecular Systems
期刊论文
COMMUNICATIONS IN COMPUTATIONAL PHYSICS, 2016, 卷号: 19, 期号: 3, 页码: 582-602
Authors:
Xie, Yan
;
Liu, Tiantian
;
Tu, Bin
;
Lu, Benzhuo
;
Zhang, Linbo
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View/Download:67/0
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Submit date:2018/07/30
Parallel mesh generation
body-fitted
PHG
biomolecules
finite element simulation
TMSmesh: A Robust Method for Molecular Surface Mesh Generation Using a Trace Technique
期刊论文
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2011, 卷号: 7, 期号: 1, 页码: 203-212
Authors:
Chen, Minxin
;
Lu, Benzhuo
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View/Download:68/0
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Submit date:2018/07/30
Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes I: Finite element solutions
期刊论文
JOURNAL OF COMPUTATIONAL PHYSICS, 2010, 卷号: 229, 期号: 19, 页码: 6979-6994
Authors:
Lu, Benzhuo
;
Holst, Michael J.
;
McCammon, J. Andrew
;
Zhou, Y. C.
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View/Download:68/0
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Submit date:2018/07/30
Electrodiffusion
Poisson-Nernst-Planck equations
Finite element
Singular charges
Molecular surface
Boundary condition
Conditioning
Image Charge Methods for a Three-Dielectric-Layer Hybrid Solvation Model of Biomolecules
期刊论文
COMMUNICATIONS IN COMPUTATIONAL PHYSICS, 2009, 卷号: 6, 期号: 5, 页码: 955-977
Authors:
Qin, Peihua
;
Xu, Zhenli
;
Cai, Wei
;
Jacobs, Donald
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View/Download:80/0
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Submit date:2018/07/30
Image charge methods
distance-dependent dielectric permittivity
hybrid implicit/explicit model
reaction field
Poisson-Boltzmann equation
protein
Quality meshing of implicit solvation models of biomolecular structures
期刊论文
COMPUTER AIDED GEOMETRIC DESIGN, 2006, 卷号: 23, 期号: 6, 页码: 510-530
Authors:
Zhang, Yongjie
;
Xu, Guoliang
;
Bajaj, Chandrajit
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View/Download:71/0
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Submit date:2018/07/30
quality mesh
biomolecule
implicit solvation model
finite element simulation