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TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data 期刊论文
BMC GENOMICS, 2019, 卷号: 20, 页码: 16
作者:  An, Shaokun;  Ma, Liang;  Wan, Lin
收藏  |  浏览/下载：248/0  |  提交时间：2019/10/28
Nonlinear dimensionality reduction  Elastic embedding  Visualization  Single-cell RNA sequencing  Time series  Cell fate decisions  Gene expression pattern  Oscillation  In-group proportion  
Reveal cell type-specific regulatory elements and their characterized histone code classes via a hidden Markov model 期刊论文
BMC GENOMICS, 2018, 卷号: 19, 页码: 13
作者:  Wang, Can;  Zhang, Shihua
收藏  |  浏览/下载：280/0  |  提交时间：2019/01/11
Epigenomics  Cell type-specific regulatory elements  Hidden Markov model  Histone modification  
Revealing transcription factor and histone modification co-localization and dynamics across cell lines by integrating ChIP-seq and RNA-seq data 期刊论文
BMC GENOMICS, 2018, 卷号: 19, 页码: 16
作者:  Zhang, Lirong;  Xue, Gaogao;  Liu, Junjie;  Li, Qianzhong;  Wang, Yong
收藏  |  浏览/下载：310/0  |  提交时间：2019/01/11
Transcription factor  Histone modification  Co-localization  Dynamics  
LPG: A four-group probabilistic approach to leveraging pleiotropy in genome-wide association studies 期刊论文
BMC Genomics, 2018, 卷号: 19, 期号: 1
作者:  Yang,Yi;  Dai,Mingwei;  Huang,Jian;  Lin,Xinyi;  Yang,Can;  Chen,Min;  Liu,Jin
收藏  |  浏览/下载：536/0  |  提交时间：2018/07/30
Pleiotropy  Variational Bayesian expectation-maximization  Genome-wide association studies  
Prediction of subcellular location of apoptosis proteins by incorporating PsePSSM and DCCA coefficient based on LFDA dimensionality reduction 期刊论文
BMC Genomics, 2018, 卷号: 19, 期号: 1
作者:  Yu,Bin;  Li,Shan;  Qiu,Wenying;  Wang,Minghui;  Du,Junwei;  Zhang,Yusen;  Chen,Xing
收藏  |  浏览/下载：210/0  |  提交时间：2018/07/30
Apoptosis proteins  Subcellular localization  Pseudo-position specific scoring matrix  Detrended cross-correlation analysis coefficient  Local fisher discriminant analysis  Support vector machine  
Reveal cell type-specific regulatory elements and their characterized histone code classes via a hidden Markov model 期刊论文
BMC GENOMICS, 2018, 卷号: 19
作者:  Wang, Can;  Zhang, Shihua
收藏  |  浏览/下载：165/0  |  提交时间：2019/04/03
Revealing transcription factor and histone modification co-localization and dynamics across cell lines by integrating ChIP-seq and RNA-seq data 期刊论文
BMC GENOMICS, 2018, 卷号: 19
作者:  Zhang, Lirong;  Xue, Gaogao;  Liu, Junjie;  Li, Qianzhong;  Wang, Yong
收藏  |  浏览/下载：246/0  |  提交时间：2019/04/03
GATE: an efficient procedure in study of pleiotropic genetic associations 期刊论文
BMC GENOMICS, 2017, 卷号: 18, 页码: 15
作者:  Zhang, Wei;  Yang, Liu;  Tang, Larry L.;  Liu, Aiyi;  Mills, James L.;  Sun, Yuanchang;  Li, Qizhai
收藏  |  浏览/下载：163/0  |  提交时间：2018/07/30
Pleiotropic genetic associations  Principal component analysis  Power  Biomedical study  
Tumor characterization and stratification by integrated molecular profiles reveals essential pan-cancer features 期刊论文
BMC GENOMICS, 2015, 卷号: 16, 页码: 12
作者:  Liu, Zhaoqi;  Zhang, Shihua
收藏  |  浏览/下载：177/0  |  提交时间：2018/07/30
IIIDB: a database for isoform-isoform interactions and isoform network modules 期刊论文
BMC Genomics, 2015, 卷号: 16, 期号: Suppl 2
作者:  Tseng,Yu-Ting;  Li,Wenyuan;  Chen,Ching-Hsien;  Zhang,Shihua;  Chen,Jeremy JW;  Zhou,Xianghong Jasmine;  Liu,Chun-Chi
收藏  |  浏览/下载：165/0  |  提交时间：2018/07/30