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Inferring domain-domain interactions from protein-protein interactions in the complex network conformation 期刊论文
BMC Systems Biology, 2012, 卷号: 6, 期号: Suppl 1
作者:  Chen,Chen;  Zhao,Jun-Fei;  Huang,Qiang;  Wang,Rui-Sheng;  Zhang,Xiang-Sun
收藏  |  浏览/下载:115/0  |  提交时间:2018/07/30
Self-organizing map of complex networks for community detection 期刊论文
JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY, 2010, 卷号: 23, 期号: 5, 页码: 931-941
作者:  Li, Zhenping;  Wang, Ruisheng;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载:108/0  |  提交时间:2018/07/30
Community detection  complex network  neural networks  self-organizing map  
SANA: an algorithm for sequential and non-sequential protein structure alignment 期刊论文
AMINO ACIDS, 2010, 卷号: 39, 期号: 2, 页码: 417-425
作者:  Wang, Lin;  Wu, Ling-Yun;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载:164/0  |  提交时间:2018/07/30
Protein structure alignment  Fold comparison  Circular permutation  Functional sites  
selforganizingmapofcomplexnetworksforcommunitydetection 期刊论文
journalofsystemsscienceandcomplexity, 2010, 卷号: 000, 期号: 005, 页码: 931
作者:  Li Zhenping;  Wang Ruisheng;  Zhang Xiangsun;  Chen Luonan
收藏  |  浏览/下载:124/0  |  提交时间:2020/01/10
Evaluating Protein Similarity from Coarse Structures 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2009, 卷号: 6, 期号: 4, 页码: 583-593
作者:  Wang, Yong;  Wu, Ling-Yun;  Zhang, Ji-Hong;  Zhan, Zhong-Wei;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载:157/0  |  提交时间:2018/07/30
Protein structure  structure comparison  protein surface  
Modularity optimization in community detection of complex networks 期刊论文
EPL, 2009, 卷号: 87, 期号: 3, 页码: 6
作者:  Zhang, X. S.;  Wang, R. S.;  Wang, Y.;  Wang, J.;  Qiu, Y.;  Wang, L.;  Chen, L.
收藏  |  浏览/下载:109/0  |  提交时间:2018/07/30
A trust region method for optimization problem with singular solutions 期刊论文
APPLIED MATHEMATICS AND OPTIMIZATION, 2007, 卷号: 56, 期号: 3, 页码: 379-394
作者:  Zhang, Juliang;  Wu, Liangyun;  Zhang, Xiangsun
收藏  |  浏览/下载:114/0  |  提交时间:2018/07/30
nonlinear convex optimization  trust region method  local error bound  superlinear convergence  nonsingularity  
Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparison 期刊论文
BMC STRUCTURAL BIOLOGY, 2006, 卷号: 6, 页码: 14
作者:  Chen, Luonan;  Wu, Ling-Yun;  Wang, Yong;  Zhang, Shihua;  Zhang, Xiang-Sun
收藏  |  浏览/下载:135/0  |  提交时间:2018/07/30
A nonmonotone trust-region algorithm with nonmonotone penalty parameters for constrained optimization 期刊论文
JOURNAL OF COMPUTATIONAL AND APPLIED MATHEMATICS, 2004, 卷号: 172, 期号: 1, 页码: 7-39
作者:  Chen, ZW;  Zhang, XS
收藏  |  浏览/下载:122/0  |  提交时间:2018/07/30
trust-region method  nonmonotone  constrained optimization  
Sequential penalty algorithm for nonlinear constrained optimization 期刊论文
JOURNAL OF OPTIMIZATION THEORY AND APPLICATIONS, 2003, 卷号: 118, 期号: 3, 页码: 635-655
作者:  Zhang, JL;  Zhang, XS
收藏  |  浏览/下载:125/0  |  提交时间:2018/07/30
nonlinear optimization  SQP method  sequential penalty algorithm  global convergence  superlinear convergence