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Corbi: a new R package for biological network alignment and querying 期刊论文
BMC Systems Biology, 2013, 卷号: 7, 期号: Suppl 2
作者:  Huang,Qiang;  Wu,Ling-Yun;  Zhang,Xiang-Sun
收藏  |  浏览/下载：149/0  |  提交时间：2018/07/30
Determining modular organization of protein interaction networks by maximizing modularity density 期刊论文
BMC SYSTEMS BIOLOGY, 2010, 卷号: 4, 页码: 12
作者:  Zhang, Shihua;  Ning, Xue-Mei;  Ding, Chris;  Zhang, Xiang-Sun
收藏  |  浏览/下载：143/0  |  提交时间：2018/07/30
SANA: an algorithm for sequential and non-sequential protein structure alignment 期刊论文
AMINO ACIDS, 2010, 卷号: 39, 期号: 2, 页码: 417-425
作者:  Wang, Lin;  Wu, Ling-Yun;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：156/0  |  提交时间：2018/07/30
Protein structure alignment  Fold comparison  Circular permutation  Functional sites  
Binary matrix factorization for analyzing gene expression data 期刊论文
DATA MINING AND KNOWLEDGE DISCOVERY, 2010, 卷号: 20, 期号: 1, 页码: 28-52
作者:  Zhang, Zhong-Yuan;  Li, Tao;  Ding, Chris;  Ren, Xian-Wen;  Zhang, Xiang-Sun
收藏  |  浏览/下载：111/0  |  提交时间：2018/07/30
Biclustering  Non-negative matrix factorization  Boundedness property of NMF  Binary matrix  
Exploring the constrained maximum edge-weight connected graph problem 期刊论文
ACTA MATHEMATICAE APPLICATAE SINICA-ENGLISH SERIES, 2009, 卷号: 25, 期号: 4, 页码: 697-708
作者:  Li, Zhen-ping;  Zhang, Shi-hua;  Zhang, Xiang-Sun;  Chen, Luo-nan
收藏  |  浏览/下载：124/0  |  提交时间：2018/07/30
connected subgraph  integer linear programming model  network flow  constraint Steiner network  maximum edge weight, heuristic algorithm  
exploringtheconstrainedmaximumedgeweightconnectedgraphproblem 期刊论文
actamathematicaeapplicataesinicaenglishseries, 2009, 卷号: 25, 期号: 4, 页码: 697
作者:  Zhenping Li;  Shihua Zhang;  XiangSun Zhang;  Luonan Chen
收藏  |  浏览/下载：130/0  |  提交时间：2020/01/10
Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures 期刊论文
NEUROCOMPUTING, 2008, 卷号: 72, 期号: 1-3, 页码: 134-141
作者:  Wang, Rui-Sheng;  Zhang, Shihua;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：136/0  |  提交时间：2018/07/30
Complex networks  Biological networks  Community structure  Nonnegative matrix factorization  Similarity measure  
Alignment of molecular networks by integer quadratic programming 期刊论文
BIOINFORMATICS, 2007, 卷号: 23, 期号: 13, 页码: 1631-1639
作者:  Zhenping, Li;  Zhang, Shihua;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：134/0  |  提交时间：2018/07/30
Convergence analysis of adaptive trust region methods 期刊论文
RAIRO-OPERATIONS RESEARCH, 2007, 卷号: 41, 期号: 1, 页码: 105-121
作者:  Shi, Zhen-Jun;  Zhang, Xiang-Sun;  Shen, Jie
收藏  |  浏览/下载：157/0  |  提交时间：2018/07/30
adaptive trust region method  unconstrained optimization  global convergence  super-linear convergence  
Supervised inference of gene regulatory networks by linear programming 期刊论文
COMPUTATIONAL INTELLIGENCE AND BIOINFORMATICS, PT 3, PROCEEDINGS, 2006, 卷号: 4115, 页码: 551-561
作者:  Wang, Yong;  Joshi, Trupti;  Xu, Dong;  Zhang, Xiang-Sun;  Chen, Luonan
收藏  |  浏览/下载：100/0  |  提交时间：2018/07/30
systems biology  gene regulatory network  linear programming