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The Graphical Representation of Protein Sequences Based on the Physicochemical Properties and Its Applications
He, Ping-An1; Zhang, Yan-Ping1; Yao, Yu-Hua2; Tang, Yi-Fa3; Nan, Xu-Ying2
2010-08-01
Source PublicationJOURNAL OF COMPUTATIONAL CHEMISTRY
ISSN0192-8651
Volume31Issue:11Pages:2136-2142
AbstractBased on the chaos game representation, a 2D graphical representation of protein sequences was introduced in which the 20 amino acids are rearranged in a cyclic order according to their physicochemical properties The Euclidean distances between the corresponding amino acids from the 2-D graphical representations are computed to find matching (or conserved) fragments of amino acids between the two proteins. Again, the cumulative distance of the 2D-graphical representations is defined to compare the similarity of protein. And, the examination of the similarity among sequences of the ND5 proteins of nine species shows the utility of our approach (C) 2010 Wiley Periodicals, Inc J Comput Chem 31 2136-2142, 2010
Keywordprotein similarity cyclic order graphical representation
DOI10.1002/jcc.21501
Language英语
Funding ProjectZhejiang Provincial Natural Science Foundation of China[Y6090261] ; Zhejiang Provincial Natural Science Foundation of China[Y607510] ; Zhejiang Provincial Open Foundation of the Most Important Subjects[SWYX0813] ; Zhejiang Provincial Open Foundation of the Most Important Subjects[SWYX0818]
WOS Research AreaChemistry
WOS SubjectChemistry, Multidisciplinary
WOS IDWOS:000279511200005
PublisherJOHN WILEY & SONS INC
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Document Type期刊论文
Identifierhttp://ir.amss.ac.cn/handle/2S8OKBNM/9529
Collection中国科学院数学与系统科学研究院
Corresponding AuthorHe, Ping-An
Affiliation1.Zhejiang Sci Tech Univ, Dept Math, Coll Sci, Hangzhou 310018, Zhejiang, Peoples R China
2.Zhejiang Sci Tech Univ, Inst Biochem, Coll Life Sci, Hangzhou 310018, Zhejiang, Peoples R China
3.Chinese Acad Sci, State Key Lab Sci & Engn Comp, ICMSEC, Acad Math & Syst Sci, Beijing 100080, Peoples R China
Recommended Citation
GB/T 7714
He, Ping-An,Zhang, Yan-Ping,Yao, Yu-Hua,et al. The Graphical Representation of Protein Sequences Based on the Physicochemical Properties and Its Applications[J]. JOURNAL OF COMPUTATIONAL CHEMISTRY,2010,31(11):2136-2142.
APA He, Ping-An,Zhang, Yan-Ping,Yao, Yu-Hua,Tang, Yi-Fa,&Nan, Xu-Ying.(2010).The Graphical Representation of Protein Sequences Based on the Physicochemical Properties and Its Applications.JOURNAL OF COMPUTATIONAL CHEMISTRY,31(11),2136-2142.
MLA He, Ping-An,et al."The Graphical Representation of Protein Sequences Based on the Physicochemical Properties and Its Applications".JOURNAL OF COMPUTATIONAL CHEMISTRY 31.11(2010):2136-2142.
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