The Graphical Representation of Protein Sequences Based on the Physicochemical Properties and Its Applications

doi:10.1002/jcc.21501

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	The Graphical Representation of Protein Sequences Based on the Physicochemical Properties and Its Applications
	He, Ping-An 1; Zhang, Yan-Ping 1; Yao, Yu-Hua 2; Tang, Yi-Fa 3; Nan, Xu-Ying 2
	2010-08-01
发表期刊	JOURNAL OF COMPUTATIONAL CHEMISTRY
ISSN	0192-8651
卷号	31 期号:11 页码:2136-2142
摘要	Based on the chaos game representation, a 2D graphical representation of protein sequences was introduced in which the 20 amino acids are rearranged in a cyclic order according to their physicochemical properties The Euclidean distances between the corresponding amino acids from the 2-D graphical representations are computed to find matching (or conserved) fragments of amino acids between the two proteins. Again, the cumulative distance of the 2D-graphical representations is defined to compare the similarity of protein. And, the examination of the similarity among sequences of the ND5 proteins of nine species shows the utility of our approach (C) 2010 Wiley Periodicals, Inc J Comput Chem 31 2136-2142, 2010
关键词	protein similarity cyclic order graphical representation
DOI	10.1002/jcc.21501
语种	英语
资助项目	Zhejiang Provincial Natural Science Foundation of China[Y6090261] ; Zhejiang Provincial Natural Science Foundation of China[Y607510] ; Zhejiang Provincial Open Foundation of the Most Important Subjects[SWYX0813] ; Zhejiang Provincial Open Foundation of the Most Important Subjects[SWYX0818]
WOS研究方向	Chemistry
WOS类目	Chemistry, Multidisciplinary
WOS记录号	WOS:000279511200005
出版者	JOHN WILEY & SONS INC
引用统计
文献类型	期刊论文
条目标识符	http://ir.amss.ac.cn/handle/2S8OKBNM/9529
专题	中国科学院数学与系统科学研究院
通讯作者	He, Ping-An
作者单位	1.Zhejiang Sci Tech Univ, Dept Math, Coll Sci, Hangzhou 310018, Zhejiang, Peoples R China 2.Zhejiang Sci Tech Univ, Inst Biochem, Coll Life Sci, Hangzhou 310018, Zhejiang, Peoples R China 3.Chinese Acad Sci, State Key Lab Sci & Engn Comp, ICMSEC, Acad Math & Syst Sci, Beijing 100080, Peoples R China
推荐引用方式 GB/T 7714	He, Ping-An,Zhang, Yan-Ping,Yao, Yu-Hua,et al. The Graphical Representation of Protein Sequences Based on the Physicochemical Properties and Its Applications[J]. JOURNAL OF COMPUTATIONAL CHEMISTRY,2010,31(11):2136-2142.
APA	He, Ping-An,Zhang, Yan-Ping,Yao, Yu-Hua,Tang, Yi-Fa,&Nan, Xu-Ying.(2010).The Graphical Representation of Protein Sequences Based on the Physicochemical Properties and Its Applications.JOURNAL OF COMPUTATIONAL CHEMISTRY,31(11),2136-2142.
MLA	He, Ping-An,et al."The Graphical Representation of Protein Sequences Based on the Physicochemical Properties and Its Applications".JOURNAL OF COMPUTATIONAL CHEMISTRY 31.11(2010):2136-2142.