KMS Of Academy of mathematics and systems sciences, CAS
Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures | |
Wang, Rui-Sheng2,5; Zhang, Shihua1,3; Wang, Yong1; Zhang, Xiang-Sun1; Chen, Luonan4,5,6,7 | |
2008-12-01 | |
发表期刊 | NEUROCOMPUTING |
ISSN | 0925-2312 |
卷号 | 72期号:1-3页码:134-141 |
摘要 | Identifying community structure in complex networks is closely related to clustering of data in other areas without an underlying network structure. In this paper, we propose a nonnegative matrix factorization (NMF)-based method for finding community structure. We first evaluate several similarity measures, such as diffusion kernel similarity, shortest path based similarity on several widely well-studied networks. Then, we apply NMF with diffusion kernel similarity to a large biological network, which demonstrates that our method can find biologically meaningful functional modules. Comparison with other algorithms also indicates the good performance of our method. (C) 2008 Elsevier B.V. All rights reserved. |
关键词 | Complex networks Biological networks Community structure Nonnegative matrix factorization Similarity measure |
DOI | 10.1016/j.neucom.2007.12.043 |
语种 | 英语 |
资助项目 | National Natural Science Foundation of China (NSFC)[10701080] ; National Natural Science Foundation of China (NSFC)[10801131] ; Research Foundation of Renmin University of China[06XN13054] ; Ministry of Science and Technology, China[2006CB503905] |
WOS研究方向 | Computer Science |
WOS类目 | Computer Science, Artificial Intelligence |
WOS记录号 | WOS:000261643700017 |
出版者 | ELSEVIER SCIENCE BV |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://ir.amss.ac.cn/handle/2S8OKBNM/6203 |
专题 | 应用数学研究所 |
通讯作者 | Zhang, Xiang-Sun |
作者单位 | 1.Chinese Acad Sci, Acad Math & Syst Sci, Beijing 100190, Peoples R China 2.Renmin Univ China, Sch Informat, Beijing 100872, Peoples R China 3.Chinese Acad Sci, Grad Univ, Beijing 100049, Peoples R China 4.Shanghai Univ, Inst Syst Biol, Shanghai 200444, Peoples R China 5.Osaka Sangyo Univ, Osaka 5748530, Japan 6.JST, ERATO, Aihara Complex Modelling Project, Tokyo 1510064, Japan 7.Univ Tokyo, Inst Ind Sci, Tokyo 1538505, Japan |
推荐引用方式 GB/T 7714 | Wang, Rui-Sheng,Zhang, Shihua,Wang, Yong,et al. Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures[J]. NEUROCOMPUTING,2008,72(1-3):134-141. |
APA | Wang, Rui-Sheng,Zhang, Shihua,Wang, Yong,Zhang, Xiang-Sun,&Chen, Luonan.(2008).Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures.NEUROCOMPUTING,72(1-3),134-141. |
MLA | Wang, Rui-Sheng,et al."Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures".NEUROCOMPUTING 72.1-3(2008):134-141. |
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