Recognition of Structure Similarities in Proteins

doi:10.1007/s11424-008-9143-5

CSpace > 应用数学研究所

	Recognition of Structure Similarities in Proteins
	Wang, Lin 1; Qiu, Yuqing ; Wang, Jiguang ; Zhang, Xiangsun1
	2008-12-01
发表期刊	JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY
ISSN	1009-6124
卷号	21 期号:4 页码:665-675
摘要	Protein fold structure is more conserved than its amino acid sequence and closely associated with biological function, so calculating the similarity of protein structures is a fundamental problem in structural biology and plays a key role in protein fold classification, fold function inference, and protein structure prediction. Large progress has been made in recent years in this field and many methods for considering structural similarity have been proposed, including methods for protein structure comparison, retrieval of protein structures from databases, and ligand binding site comparison. Most of those methods can be available on the World Wide Web, but evaluation of all the methods is still a hard problem. This paper summarizes some popular methods and latest methods for structure similarities, including structure alignment, protein structure retrieval, and ligand binding site alignment.
关键词	Binding site alignment circular permutations flexible alignment protein structure alignment protein structure retrieval
DOI	10.1007/s11424-008-9143-5
语种	英语
资助项目	National Natural Science Foundation of China under Key Research[10631070] ; JSPs ; JSPS-NSFC[10711140116]
WOS研究方向	Mathematics
WOS类目	Mathematics, Interdisciplinary Applications
WOS记录号	WOS:000260878200014
出版者	SPRINGER HEIDELBERG
引用统计
文献类型	期刊论文
条目标识符	http://ir.amss.ac.cn/handle/2S8OKBNM/5618
专题	应用数学研究所
通讯作者	Wang, Lin
作者单位	1.Chinese Acad Sci, Acad Math & Syst Sci, Beijing 100190, Peoples R China 2.Chinese Acad Sci, Grad Sch, Beijing 100049, Peoples R China
推荐引用方式 GB/T 7714	Wang, Lin,Qiu, Yuqing,Wang, Jiguang,et al. Recognition of Structure Similarities in Proteins[J]. JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY,2008,21(4):665-675.
APA	Wang, Lin,Qiu, Yuqing,Wang, Jiguang,&Zhang, Xiangsun.(2008).Recognition of Structure Similarities in Proteins.JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY,21(4),665-675.
MLA	Wang, Lin,et al."Recognition of Structure Similarities in Proteins".JOURNAL OF SYSTEMS SCIENCE & COMPLEXITY 21.4(2008):665-675.