An inverse averaging finite element method for solving three-dimensional Poisson-Nernst-Planck equations in nanopore system simulations

doi:10.1063/5.0066194

CSpace

	An inverse averaging finite element method for solving three-dimensional Poisson-Nernst-Planck equations in nanopore system simulations
	Zhang, Qianru 1,2; Wang, Qin 1,2; Zhang, Linbo 1,2; Lu, Benzhuo 1,2
	2021-11-21
发表期刊	JOURNAL OF CHEMICAL PHYSICS
ISSN	0021-9606
卷号	155 期号:19 页码:13
摘要	The Poisson-Nernst-Planck (PNP) model plays an important role in simulating nanopore systems. In nanopore simulations, the large-size nanopore system and convection-domination Nernst-Planck (NP) equations will bring convergence difficulties and numerical instability problems. Therefore, we propose an improved finite element method (FEM) with an inverse averaging technique to solve the three-dimensional PNP model, named inverse averaging FEM (IAFEM). At first, the Slotboom variables are introduced aiming at transforming non-symmetric NP equations into self-adjoint second-order elliptic equations with exponentially behaved coefficients. Then, these exponential coefficients are approximated with their harmonic averages, which are calculated with an inverse averaging technique on every edge of each tetrahedral element in the grid. Our scheme shows good convergence when simulating single or porous nanopore systems. In addition, it is still stable when the NP equations are convection domination. Our method can also guarantee the conservation of computed currents well, which is the advantage that many stabilization schemes do not possess. Our numerical experiments on benchmark problems verify the accuracy and robustness of our scheme. The numerical results also show that the method performs better than the standard FEM when dealing with convection-domination problems. A successful simulation combined with realistic chemical experiments is also presented to illustrate that the IAFEM is still effective for three-dimensional interconnected nanopore systems.
DOI	10.1063/5.0066194
收录类别	SCI
语种	英语
资助项目	National Key R&D Program of China[2019YFA0709600] ; National Key R&D Program of China[2019YFA0709601] ; National Natural Science Foundation of China[11771435] ; National Natural Science Foundation of China[22073110]
WOS研究方向	Chemistry ; Physics
WOS类目	Chemistry, Physical ; Physics, Atomic, Molecular & Chemical
WOS记录号	WOS:000719748700001
出版者	AIP Publishing
引用统计
文献类型	期刊论文
条目标识符	http://ir.amss.ac.cn/handle/2S8OKBNM/59575
专题	中国科学院数学与系统科学研究院
通讯作者	Lu, Benzhuo
作者单位	1.Chinese Acad Sci, Acad Math & Syst Sci, NCMIS, CEMS,LSEC, Beijing, Peoples R China 2.Univ Chinese Acad Sci, Sch Math Sci, Beijing, Peoples R China
推荐引用方式 GB/T 7714	Zhang, Qianru,Wang, Qin,Zhang, Linbo,et al. An inverse averaging finite element method for solving three-dimensional Poisson-Nernst-Planck equations in nanopore system simulations[J]. JOURNAL OF CHEMICAL PHYSICS,2021,155(19):13.
APA	Zhang, Qianru,Wang, Qin,Zhang, Linbo,&Lu, Benzhuo.(2021).An inverse averaging finite element method for solving three-dimensional Poisson-Nernst-Planck equations in nanopore system simulations.JOURNAL OF CHEMICAL PHYSICS,155(19),13.
MLA	Zhang, Qianru,et al."An inverse averaging finite element method for solving three-dimensional Poisson-Nernst-Planck equations in nanopore system simulations".JOURNAL OF CHEMICAL PHYSICS 155.19(2021):13.