KMS Of Academy of mathematics and systems sciences, CAS
| Maximal entropy random walk on heterogenous network for MIRNA-disease Association prediction | |
Ya-Wei, Niu1; Hua, Liu1; Guang-Hui, Wang1; Gui-Ying, Yan2
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| 2018-12-01 | |
| Source Publication | MATHEMATICAL BIOSCIENCES
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| ISSN | 0025-5564 |
| Volume | 306Pages:1-9 |
| Abstract | The last few decades have verified the vital roles of microRNAs in the development of human diseases and witnessed the increasing interest in the prediction of potential disease-miRNA associations. Owning to the open access of many miRNA-related databases, up until recently, kinds of feasible in silico models have been proposed. In this work, we developed a computational model of Maximal Entropy Random Walk on heterogenous network for MiRNA-disease Association prediction (MERWMDA). MERWMDA integrated known disease-miRNA association, pair-wise functional relation of miRNAs and pair-wise semantic relation of diseases into a heterogenous network comprised of disease and miRNA nodes full of information. As a kind of widely-applied biased walk process with more randomness, MERW was then implemented on the heterogenous network to reveal potential disease-miRNA associations. Cross validation was further performed to evaluate the performance of MERWMDA. As a result, MERWMDA obtained AUCs of 0.8966 and 0.8491 respectively in the aspect of global and local leaveone-out cross validation. What more, three different case study strategies on four human complex diseases were conducted to comprehensively assess the quality of the model. Specifically, one kind of case study on Esophageal cancer and Prostate cancer were conducted based on HMDD v2.0 database. 94% and 88% out of the top 50 ranked miRNAs were confirmed by recent literature, respectively. To simulate new disease without known related miRNAs, Lung cancer (confirmed ratio 94%) associated miRNAs were removed for case study. Lymphoma (verified ratio 88%) was adopted to assess the prediction robustness of MERWMDA based on HMDD v1.0 database. We anticipated that MERWMDA could offer valuable candidates for in vitro biomedical experiments in future. |
| Keyword | Maximal entropy random walk Heterogenous network microRNA Disease miRNA-disease association |
| DOI | 10.1016/j.mbs.2018.10.004 |
| Language | 英语 |
| Funding Project | National Natural Science Foundation of China[11631014] |
| WOS Research Area | Life Sciences & Biomedicine - Other Topics ; Mathematical & Computational Biology |
| WOS Subject | Biology ; Mathematical & Computational Biology |
| WOS ID | WOS:000453496200001 |
| Publisher | ELSEVIER SCIENCE INC |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.amss.ac.cn/handle/2S8OKBNM/31824 |
| Collection | 应用数学研究所 |
| Corresponding Author | Guang-Hui, Wang |
| Affiliation | 1.Shandong Univ, Sch Math, Jinan 250100, Shandong, Peoples R China 2.Chinese Acad Sci, Acad Math & Syst Sci, Beijing 100190, Peoples R China |
| Recommended Citation GB/T 7714 | Ya-Wei, Niu,Hua, Liu,Guang-Hui, Wang,et al. Maximal entropy random walk on heterogenous network for MIRNA-disease Association prediction[J]. MATHEMATICAL BIOSCIENCES,2018,306:1-9. |
| APA | Ya-Wei, Niu,Hua, Liu,Guang-Hui, Wang,&Gui-Ying, Yan.(2018).Maximal entropy random walk on heterogenous network for MIRNA-disease Association prediction.MATHEMATICAL BIOSCIENCES,306,1-9. |
| MLA | Ya-Wei, Niu,et al."Maximal entropy random walk on heterogenous network for MIRNA-disease Association prediction".MATHEMATICAL BIOSCIENCES 306(2018):1-9. |
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