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Group testing can improve the cost-efficiency of prospective-retrospective biomarker studies 期刊论文
BMC MEDICAL RESEARCH METHODOLOGY, 2021, 卷号: 21, 期号: 1, 页码: 10
作者:  Zhang, Wei;  Zhang, Zhiwei;  Krushkal, Julia;  Liu, Aiyi
收藏  |  浏览/下载：133/0  |  提交时间：2021/04/26
Biomarker study design  Cost-efficiency  Group testing  Pooling  Two-phase sampling  
Time course regulatory analysis based on paired expression and chromatin accessibility data 期刊论文
GENOME RESEARCH, 2020, 卷号: 30, 期号: 4, 页码: 622-634
作者:  Duren, Zhana;  Chen, Xi;  Xin, Jingxue;  Wang, Yong;  Wong, Wing Hung
收藏  |  浏览/下载：174/0  |  提交时间：2020/06/30
Extreme-value sampling design is cost-beneficial only with a valid statistical approach for exposure-secondary outcome association analyses 期刊论文
STATISTICAL METHODS IN MEDICAL RESEARCH, 2020, 卷号: 29, 期号: 2, 页码: 466-480
作者:  Zhang, Hang;  Bi, Wenjian;  Cui, Yuehua;  Chen, Honglei;  Chen, Jinbo;  Zhao, Yanlong;  Kang, Guolian
收藏  |  浏览/下载：173/0  |  提交时间：2020/05/24
Secondary outcome  exposure  extreme-value sampling design  primary outcome  cost-effective  
Confidence intervals for Markov chain transition probabilities based on next generation sequencing reads data 期刊论文
QUANTITATIVE BIOLOGY, 2020, 卷号: 8, 期号: 2, 页码: 143-154
作者:  Wan, Lin;  Kang, Xin;  Ren, Jie;  Sun, Fengzhu
收藏  |  浏览/下载：182/0  |  提交时间：2021/01/14
DNA  FREQUENCIES  PREDICTION  Markov chains  next generation sequencing  transition probabilities  confidence intervals  
Parameter Estimation and Variable Selection for Big Systems of Linear Ordinary Differential Equations: A Matrix-Based Approach 期刊论文
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2019, 卷号: 114, 期号: 526, 页码: 657-667
作者:  Wu, Leqin;  Qiu, Xing;  Yuan, Ya-xiang;  Wu, Hulin
收藏  |  浏览/下载：181/0  |  提交时间：2020/01/10
Complex system  Eigenvalue updating algorithm  High dimension  Matrix-based variable selection  Ordinary differential equation  Separable least squares  
Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data 期刊论文
NUCLEIC ACIDS RESEARCH, 2017, 卷号: 45, 期号: 10, 页码: 5666-5677
作者:  Zamanighomi, Mahdi;  Lin, Zhixiang;  Wang, Yong;  Jiang, Rui;  Wong, Wing Hung
收藏  |  浏览/下载：144/0  |  提交时间：2018/07/30
D-OPTIMALITY OF GROUP TESTING FOR JOINT ESTIMATION OF CORRELATED RARE DISEASES WITH MISCLASSIFICATION 期刊论文
STATISTICA SINICA, 2017, 卷号: 27, 期号: 2, 页码: 823-838
作者:  Li, Qizhai;  Liu, Aiyi;  Xiong, Wenjun
收藏  |  浏览/下载：120/0  |  提交时间：2018/07/30
Binary outcomes  classification error  D-optimal criterion  group testing  maximum likelihood estimate  prevalence  
A Robust and Powerful Set-Valued Approach to Rare Variant Association Analyses of Secondary Traits in Case-Control Sequencing Studies 期刊论文
GENETICS, 2017, 卷号: 205, 期号: 3, 页码: 1049-1062
作者:  Kang, Guolian;  Bi, Wenjian;  Zhang, Hang;  Pounds, Stanley;  Cheng, Cheng;  Shete, Sanjay;  Zou, Fei;  Zhao, Yanlong;  Zhang, Ji-Feng;  Yue, Weihua
收藏  |  浏览/下载：130/0  |  提交时间：2018/07/30
secondary traits  rare variants association analyses  case-control sequencing study  set-valued model  
High-dimensional genomic data bias correction and data integration using MANCIE 期刊论文
NATURE COMMUNICATIONS, 2016, 卷号: 7, 页码: 8
作者:  Zang, Chongzhi;  Wang, Tao;  Deng, Ke;  Li, Bo;  Hu, Sheng'en;  Qin, Qian;  Xiao, Tengfei;  Zhang, Shihua;  Meyer, Clifford A.;  He, Housheng Hansen;  Brown, Myles;  Liu, Jun S.;  Xie, Yang;  Liu, X. Shirley
收藏  |  浏览/下载：158/0  |  提交时间：2018/07/30
SVSI: Fast and Powerful Set-Valued System Identification Approach to Identifying Rare Variants in Sequencing Studies for Ordered Categorical Traits 期刊论文
ANNALS OF HUMAN GENETICS, 2015, 卷号: 79, 期号: 4, 页码: 294-309
作者:  Bi, Wenjian;  Kang, Guolian;  Zhao, Yanlong;  Cui, Yuehua;  Yan, Song;  Li, Yun;  Cheng, Cheng;  Pounds, Stanley B.;  Borowitz, Michael J.;  Relling, Mary V.;  Yang, Jun J.;  Liu, Zhifa;  Pui, Ching-Hon;  Hunger, Stephen P.;  Hartford, Christine M.;  Leung, Wing;  Zhang, Ji-Feng
收藏  |  浏览/下载：172/0  |  提交时间：2018/07/30
Ordered logistic model  set-valued system identification  multiple thresholds  genetic association study  rare variants