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Molecular Sparse Representation by a 3D Ellipsoid Radial Basis Function Neural Network via L1 Regularization 期刊论文
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2020, 卷号: 60, 期号: 12, 页码: 6054-6064
作者:  Gui, Sheng;  Chen, Zhaodi;  Lu, Benzhuo;  Chen, Minxin
收藏  |  浏览/下载：131/0  |  提交时间：2021/04/26
DASHMM Accelerated Adaptive Fast Multipole Poisson-Boltzmann Solver on Distributed Memory Architecture 期刊论文
COMMUNICATIONS IN COMPUTATIONAL PHYSICS, 2019, 卷号: 25, 期号: 4, 页码: 1235-1258
作者:  Zhang, Bo;  DeBuhr, Jackson;  Niedzielski, Drake;  Mayolo, Silvio;  Lu, Benzhuo;  Sterling, Thomas
收藏  |  浏览/下载：180/0  |  提交时间：2019/03/05
Poisson-Boltzmann equation  boundary element method  DASHMM  distributed computing  
A DECOUPLING TWO-GRID METHOD FOR THE STEADY-STATE POISSON-NERNST-PLANCK EQUATIONS 期刊论文
JOURNAL OF COMPUTATIONAL MATHEMATICS, 2019, 卷号: 37, 期号: 4, 页码: 556-578
作者:  Yang, Ying;  Lu, Benzhuo;  Xie, Yan
收藏  |  浏览/下载：127/0  |  提交时间：2020/05/24
Poisson-Nernst-Planck equations  Two-grid finite element method  Decoupling method  Error analysis  Gummel iteration  
Conic shapes have higher sensitivity than cylindrical ones in nanopore DNA sequencing 期刊论文
SCIENTIFIC REPORTS, 2018, 卷号: 8, 页码: 11
作者:  Tu, Bin;  Bai, Shiyang;  Lu, Benzhuo;  Fang, Qiaojun
收藏  |  浏览/下载：151/0  |  提交时间：2018/07/30
A Finite Element Solution of Lateral Periodic Poisson-Boltzmann Model for Membrane Channel Proteins 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2018, 卷号: 19, 期号: 3, 页码: 17
作者:  Ji, Nan;  Liu, Tiantian;  Xu, Jingjie;  Shen, Longzhu Q.;  Lu, Benzhuo
收藏  |  浏览/下载：170/0  |  提交时间：2018/07/30
laterally periodic Poisson-Boltzmann model  finite element method  membrane channel proteins  pore region  solvation  
Introducing Membrane Transport Energy into the Design of Sustainable Chemicals against Cytotoxicity 期刊论文
ACS SUSTAINABLE CHEMISTRY & ENGINEERING, 2018, 卷号: 6, 期号: 2, 页码: 2055-2061
作者:  Shen, Longzhu Q.;  Nan, Ji;  Lu, Benzhuo
收藏  |  浏览/下载：143/0  |  提交时间：2018/07/30
DFT  Cytotoxicity  Membrane  Finite element  Poisson Boltzmann  Geometry  Sustainability  
EFFICIENT AND QUALIFIED MESH GENERATION FOR GAUSSIAN MOLECULAR SURFACE USING ADAPTIVE PARTITION AND PIECEWISE POLYNOMIAL APPROXIMATION 期刊论文
SIAM JOURNAL ON SCIENTIFIC COMPUTING, 2018, 卷号: 40, 期号: 2, 页码: B507-B527
作者:  Liu, Tiantian;  Chen, Minxin;  Lu, Benzhuo
收藏  |  浏览/下载：160/0  |  提交时间：2018/07/30
surface mesh generation  Gaussian surface  triangulation  adaptive partition  trilinear polynomial  
ANALYSIS OF THE MEAN FIELD FREE ENERGY FUNCTIONAL OF ELECTROLYTE SOLUTION WITH NONHOMOGENOUS BOUNDARY CONDITIONS AND THE GENERALIZED PB/PNP EQUATIONS WITH INHOMOGENEOUS DIELECTRIC PERMITTIVITY 期刊论文
SIAM JOURNAL ON APPLIED MATHEMATICS, 2018, 卷号: 78, 期号: 2, 页码: 1131-1154
作者:  Liu, Xuejiao;  Qiao, Yu;  Lu, Benzhou
收藏  |  浏览/下载：168/0  |  提交时间：2018/07/30
free energy functional  electrolyte  boundary conditions  variable dielectric  generalized Poisson-Nernst-Planck/Poisson-Boltzmann equations  energy law  
Incorporating Born solvation energy into the three-dimensional Poisson-Nernst-Planck model to study ion selectivity in KcsA K+ channels 期刊论文
PHYSICAL REVIEW E, 2017, 卷号: 96, 期号: 6, 页码: 10
作者:  Liu, Xuejiao;  Lu, Benzhuo
收藏  |  浏览/下载：155/0  |  提交时间：2018/07/30
Quality improvement of surface triangular mesh using a modified Laplacian smoothing approach avoiding intersection 期刊论文
PLOS ONE, 2017, 卷号: 12, 期号: 9, 页码: 16
作者:  Liu, Tiantian;  Chen, Minxin;  Song, Yu;  Li, Hongliang;  Lu, Benzhuo
收藏  |  浏览/下载：114/0  |  提交时间：2018/07/30