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中国科学院数学与系统科学研究院机构知识库
KMS Of Academy of mathematics and systems sciences, CAS
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Null-free False Discovery Rate Control Using Decoy Permutations
期刊论文
ACTA MATHEMATICAE APPLICATAE SINICA-ENGLISH SERIES, 2022, 卷号: 38, 期号: 2, 页码: 235-253
Authors:
He, Kun
;
Li, Meng-jie
;
Fu, Yan
;
Gong, Fu-zhou
;
Sun, Xiao-ming
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View/Download:85/0
  |  
Submit date:2022/06/21
multiple testing
false discovery rate
null distribution-free
p-value-free
decoy permutations
knockoff filter
DeepDigest: Prediction of Protein Proteolytic Digestion with Deep Learning
期刊论文
ANALYTICAL CHEMISTRY, 2021, 卷号: 93, 期号: 15, 页码: 6094-6103
Authors:
Yang, Jinghan
;
Gao, Zhiqiang
;
Ren, Xiuhan
;
Sheng, Jie
;
Xu, Ping
;
Chang, Cheng
;
Fu, Yan
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View/Download:112/0
  |  
Submit date:2021/10/26
Unambiguous Phosphosite Localization through the Combination of Trypsin and LysargiNase Mirror Spectra in a Large-Scale Phosphoproteome Study
期刊论文
JOURNAL OF PROTEOME RESEARCH, 2020, 卷号: 19, 期号: 6, 页码: 2185-2194
Authors:
Xu, Feng
;
Yu, Li
;
Peng, Xuehui
;
Zhang, Junling
;
Li, Suzhen
;
Liu, Shu
;
Yin, Yanan
;
An, Zhiwu
;
Wang, Fuqiang
;
Fu, Yan
;
Xu, Ping
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View/Download:161/0
  |  
Submit date:2020/09/23
trypsin
LysargiNase
combined spectra
ion coverage
phosphosite localization
PTMiner
Transfer posterior error probability estimation for peptide identification
期刊论文
BMC Bioinformatics, 2020, 卷号: 21, 期号: 1
Authors:
Yi,Xinpei
;
Gong,Fuzhou
;
Fu,Yan
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View/Download:119/0
  |  
Submit date:2020/05/24
Proteomics
Mass spectrometry
Quality control
Posterior error probability
Local false discovery rate
Transfer learning
Large-scale Identification of N-linked Intact Glycopeptides in Human Serum using HILIC Enrichment and Spectral Library Search
期刊论文
MOLECULAR & CELLULAR PROTEOMICS, 2020, 卷号: 19, 期号: 4, 页码: 672-689
Authors:
Shu, Qingbo
;
Li, Mengjie
;
Shu, Lian
;
An, Zhiwu
;
Wang, Jifeng
;
Lv, Hao
;
Yang, Ming
;
Cai, Tanxi
;
Hu, Tony
;
Fu, Yan
;
Yang, Fuquan
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View/Download:135/0
  |  
Submit date:2020/05/24
AP3: An Advanced Proteotypic Peptide Predictor for Targeted Proteomics by Incorporating Peptide Digestibility
期刊论文
ANALYTICAL CHEMISTRY, 2019, 卷号: 91, 期号: 13, 页码: 8705-8711
Authors:
Gao, Zhiqiang
;
Chang, Cheng
;
Yang, Jinghan
;
Zhu, Yunping
;
Fu, Yan
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View/Download:166/0
  |  
Submit date:2020/01/10
GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes
期刊论文
GENOME RESEARCH, 2019, 卷号: 29, 期号: 4, 页码: 682-696
Authors:
Shao, Yi
;
Chen, Chunyan
;
Shen, Hao
;
He, Bin Z.
;
Yu, Daqi
;
Jiang, Shuai
;
Zhao, Shilei
;
Gao, Zhiqiang
;
Zhu, Zhenglin
;
Chen, Xi
;
Fu, Yan
;
Chen, Hua
;
Gao, Ge
;
Long, Manyuan
;
Zhang, Yong E.
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  |  
View/Download:157/0
  |  
Submit date:2020/01/10
PTMiner: Localization and Quality Control of Protein Modifications Detected in an Open Search and Its Application to Comprehensive Post-translational Modification Characterization in Human Proteome
期刊论文
MOLECULAR & CELLULAR PROTEOMICS, 2019, 卷号: 18, 期号: 2, 页码: 391-405
Authors:
An, Zhiwu
;
Zhai, Linhui
;
Ying, Wantao
;
Qian, Xiaohong
;
Gong, Fuzhou
;
Tan, Minjia
;
Fu, Yan
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  |  
View/Download:339/0
  |  
Submit date:2019/03/11
LFAQ: Toward Unbiased Label-Free Absolute Protein Quantification by Predicting Peptide Quantitative Factors
期刊论文
ANALYTICAL CHEMISTRY, 2019, 卷号: 91, 期号: 2, 页码: 1335-1343
Authors:
Chang, Cheng
;
Gao, Zhiqiang
;
Ying, Wantao
;
Fu, Yan
;
Zhao, Yan
;
Wu, Songfeng
;
Li, Mengjie
;
Wang, Guibin
;
Qian, Xiaohong
;
Zhu, Yunping
;
He, Fuchu
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  |  
View/Download:157/0
  |  
Submit date:2019/03/05
Quality control of single amino acid variations detected by tandem mass spectrometry
期刊论文
JOURNAL OF PROTEOMICS, 2018, 卷号: 187, 页码: 144-151
Authors:
Yi, Xinpei
;
Wang, Bo
;
An, Zhiwu
;
Gong, Fuzhou
;
Li, Jing
;
Fu, Yan
Favorite
  |  
View/Download:235/0
  |  
Submit date:2018/11/16
Single amino acid variations
Mass spectrometry
Peptide identification
False discovery rate
Unrestrictive mass shift relocalization