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Comparative DNA methylation analysis to decipher common and cell type-specific patterns among multiple cell types 期刊论文
BRIEFINGS IN FUNCTIONAL GENOMICS, 2016, 卷号: 15, 期号: 6, 页码: 399-407
作者:  Yang, Xiaofei;  Shao, Xiaojian;  Gao, Lin;  Zhang, Shihua
收藏  |  浏览/下载:158/0  |  提交时间:2018/07/30
DNA methylation patterns  differentially methylation regions  comparative studies  tissue-specific methylation  cancer epigenomics  
Quantitative function and algorithm for community detection in bipartite networks 期刊论文
INFORMATION SCIENCES, 2016, 卷号: 367, 页码: 874-889
作者:  Li, Zhenping;  Wang, Rui-Sheng;  Zhang, Shihua;  Zhang, Xiang-Sun
收藏  |  浏览/下载:160/0  |  提交时间:2018/07/30
Bipartite network  Community  Quantitative function  Integer programming  Label propagation algorithm  
An integrative and comparative study of pan-cancer transcriptomes reveals distinct cancer common and specific signatures 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 13
作者:  Cao, Zhen;  Zhang, Shihua
收藏  |  浏览/下载:130/0  |  提交时间:2018/07/30
Local community extraction in directed networks 期刊论文
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2016, 卷号: 452, 页码: 258-265
作者:  Ning, Xuemei;  Liu, Zhaoqi;  Zhang, Shihua
收藏  |  浏览/下载:132/0  |  提交时间:2018/07/30
Complex network  Community structure  Clustering  Optimization  
Integrative analysis for identifying joint modular patterns of gene-expression and drug-response data 期刊论文
BIOINFORMATICS, 2016, 卷号: 32, 期号: 11, 页码: 1724-1732
作者:  Chen, Jinyu;  Zhang, Shihua
收藏  |  浏览/下载:139/0  |  提交时间:2018/07/30
A Two-Stage Method to Identify Joint Modules From Matched MicroRNA and mRNA Expression Data 期刊论文
IEEE TRANSACTIONS ON NANOBIOSCIENCE, 2016, 卷号: 15, 期号: 4, 页码: 362-370
作者:  Min, Wenwen;  Liu, Juan;  Luo, Fei;  Zhang, Shihua
收藏  |  浏览/下载:166/0  |  提交时间:2018/07/30
L-0-penalized singular value decomposition (L-0-SVD)  miRNA cluster  miRNA-gene joint module  multiple-output sparse group lasso  
A Link Between the Log-Sobolev Inequality and Lyapunov Condition 期刊论文
POTENTIAL ANALYSIS, 2016, 卷号: 44, 期号: 4, 页码: 629-637
作者:  Liu, Yuan
收藏  |  浏览/下载:126/0  |  提交时间:2018/07/30
Log-Sobolev inequality  Log-concave measure  Heat flow  Symmetric diffusion  Lyapunov condition  
A Probabilistic Method for Estimating the Sharing of Identity by Descent for Populations with Migration 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2016, 卷号: 13, 期号: 2, 页码: 281-290
作者:  Ni, Xumin;  Guo, Wei;  Yuan, Kai;  Yang, Xiong;  Ma, Zhiming;  Xu, Shuhua;  Zhang, Shihua
收藏  |  浏览/下载:174/0  |  提交时间:2018/07/30
Population genetics  identity by descent  probabilistic method  Markov process  
Length Distribution of Ancestral Tracks under a General Admixture Model and Its Applications in Population History Inference 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 12
作者:  Ni, Xumin;  Yang, Xiong;  Guo, Wei;  Yuan, Kai;  Zhou, Ying;  Ma, Zhiming;  Xu, Shuhua
收藏  |  浏览/下载:164/0  |  提交时间:2018/07/30