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Quantitative function and algorithm for community detection in bipartite networks 期刊论文
INFORMATION SCIENCES, 2016, 卷号: 367, 页码: 874-889
Authors:  Li, Zhenping;  Wang, Rui-Sheng;  Zhang, Shihua;  Zhang, Xiang-Sun
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Bipartite network  Community  Quantitative function  Integer programming  Label propagation algorithm  
Determining modular organization of protein interaction networks by maximizing modularity density 期刊论文
BMC SYSTEMS BIOLOGY, 2010, 卷号: 4, 页码: 12
Authors:  Zhang, Shihua;  Ning, Xue-Mei;  Ding, Chris;  Zhang, Xiang-Sun
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Detecting disease associated modules and prioritizing active genes based on high throughput data 期刊论文
BMC BIOINFORMATICS, 2010, 卷号: 11, 页码: 12
Authors:  Qiu, Yu-Qing;  Zhang, Shihua;  Zhang, Xiang-Sun;  Chen, Luonan
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Exploring the constrained maximum edge-weight connected graph problem 期刊论文
ACTA MATHEMATICAE APPLICATAE SINICA-ENGLISH SERIES, 2009, 卷号: 25, 期号: 4, 页码: 697-708
Authors:  Li, Zhen-ping;  Zhang, Shi-hua;  Zhang, Xiang-Sun;  Chen, Luo-nan
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connected subgraph  integer linear programming model  network flow  constraint Steiner network  maximum edge weight, heuristic algorithm  
Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases 期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2009, 卷号: 5, 期号: 9, 页码: 12
Authors:  Wang, Jiguang;  Zhang, Shihua;  Wang, Yong;  Chen, Luonan;  Zhang, Xiang-Sun
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A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks 期刊论文
INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS, 2009, 卷号: 3, 期号: 1, 页码: 68-84
Authors:  Zhang, Shihua;  Liu, Hong-Wei;  Ning, Xue-Mei;  Zhang, Xiang-Sun
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PPI  protein-protein interaction network  network clustering  LGT  line graph transformation  protein complexes  functional modules  data mining  bioinformatics  
Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures 期刊论文
NEUROCOMPUTING, 2008, 卷号: 72, 期号: 1-3, 页码: 134-141
Authors:  Wang, Rui-Sheng;  Zhang, Shihua;  Wang, Yong;  Zhang, Xiang-Sun;  Chen, Luonan
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Complex networks  Biological networks  Community structure  Nonnegative matrix factorization  Similarity measure  
Quantitative function for community detection 期刊论文
PHYSICAL REVIEW E, 2008, 卷号: 77, 期号: 3, 页码: 9
Authors:  Li, Zhenping;  Zhang, Shihua;  Wang, Rui-Sheng;  Zhang, Xiang-Sun;  Chen, Luonan
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Biomolecular network querying: a promising approach in systems biology 期刊论文
BMC SYSTEMS BIOLOGY, 2008, 卷号: 2, 页码: 6
Authors:  Zhang, Shihua;  Zhang, Xiang-Sun;  Chen, Luonan
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Hubs with Network Motifs Organize Modularity Dynamically in the Protein-Protein Interaction Network of Yeast 期刊论文
PLOS ONE, 2007, 卷号: 2, 期号: 11, 页码: 9
Authors:  Jin, Guangxu;  Zhang, Shihua;  Zhang, Xiang-Sun;  Chen, Luonan
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